Protein

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Genbank accession
QOC57890.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAWYNDGTISVTNGSKVVTGTGTKFLSNIRNGAILMIGPKLRIINDIKSDTELELEVAYDGPTQANIVYEIIRNWQDTSPTELARRIDNFLTDRQRTMDEFVTWVNGTYNGGAANDGKYPLTDRYGKVRLVKSPERMEYETGGTSGGGGGADLTGASIFLASDYGVMGGLTIDETDNINAALNDVALKGGGKLIVRSKNGTDPIYLNGLVAIESNNVTLEFVSDVVYGSKGWMRISGGLAEIRRPGQIELLKLRVNSYANEDGYMVLPMRENNGSFLRVGDRITVRGQNDRNGKVIEKQVTIVNQIIGDDVICSDEPDYTFKPTYPDSDYPEDLTTGTTISISVYSAMTANTRNTDVIPVVDSTGFFAGDLVYVSDARTEKDMMAPVVTNLLSAANMEIVRIAAVEGNNLRLERAIRREYQTVWAAGVVKMDAIKNSHIKLRNVSWIGIQPDRKAHGAAINYGWGCTVRVDDMQGRGGRKGIGVRVAYAYDCHVLDSKVYDAYSFLSAEGYGISLYYSTMCSIRNCNASGNRHNYLLQTATSCDVFDNNSNDDYISGIDLHGAGSVDCRVMRNRLSRSKSYADGVTNGGAIRNGNTAHTIGDHRTVIADNYIEGYLDVKCAAIDVSPSSNDVIIRNNDIVDCAVGFRHYRVGSGISPAQHSNRVTVEYNNFTRVLNPFDVDNYANSAFDELIMIGNKSIENSTHFVVKGIPKVLAMENKILRPVPTPGAFAFDFTRCGNVKAYGNYAGEAARGITVTSCTYAKLVRNMLGDVTENVAVNDGGGNVTLINLQNTDALPSGGGGGTASPAKFTRIMGTLADKITSTDPVNIDNNAPSIANGLTAVQGSVNVAIGSLIEVYAIAPYVSLGGSTGPVTAHLWADGVRVATSVDRLTASTGAENTGGKDFVLVANFIATEEVLDLILKIGPNSNSNTIMLNSKFGGASQPYILVKEFPQ
Physico‐chemical
properties
protein length:954 AA
molecular weight: 102870,35830 Da
isoelectric point:5,41604
aromaticity:0,07547
hydropathy:-0,18836

Domains

Domains [InterPro]
DC_1966
ATT
1–465
DC_1966 IPR006626 IPR006626 IPR011050
IPR011050
STR
177–652
IPR011050 IPR006626 DC_1256
IPR006626
Unmapped
602–627
IPR006626 IPR006626 IPR006626
QOC57890.1
1 954
Architecture
ATT
STR
RBD
ATT 1-465 | STR 466-795 | RBD 796-954
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC57890.1
1 954
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,9914
Central domain 174 801 629 0,9937
C-terminal 802 954 152 0,9962
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-801
C-terminal
802-954

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiK7B1
[NCBI] 		2755401 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC57890.1 [NCBI]
Genbank nucleotide accession
MT354569.1 [NCBI]
CDS location
range 31204 -> 34068
strand +
CDS
ATGGCCTGGTATAACGACGGCACAATCTCTGTGACCAACGGCAGCAAAGTCGTTACAGGGACTGGCACCAAGTTCTTGAGCAACATCCGTAATGGGGCGATCCTGATGATCGGCCCCAAGCTGCGGATCATCAACGACATCAAATCGGACACCGAGCTTGAGCTTGAGGTCGCCTATGACGGGCCGACTCAAGCCAACATCGTCTACGAAATCATCCGCAACTGGCAGGACACCAGCCCAACTGAGCTTGCCCGCCGGATCGACAACTTCCTGACCGACCGCCAGCGCACGATGGACGAGTTCGTCACCTGGGTGAACGGCACGTACAACGGTGGTGCAGCGAATGACGGCAAATACCCGCTGACTGACCGCTACGGCAAAGTTCGTCTGGTGAAAAGCCCTGAGCGCATGGAGTACGAGACGGGCGGTACAAGTGGCGGAGGTGGTGGCGCAGACCTCACCGGTGCGAGCATCTTCCTGGCCAGCGACTACGGTGTCATGGGTGGTCTGACCATCGACGAGACGGACAACATCAACGCCGCGCTCAACGATGTCGCCCTGAAAGGTGGCGGCAAGCTGATCGTGCGCAGCAAGAACGGCACCGACCCGATCTACCTCAATGGCCTGGTTGCCATCGAGTCGAACAACGTCACCCTCGAATTCGTGAGCGACGTGGTTTACGGCAGCAAGGGCTGGATGCGTATCTCTGGTGGCCTGGCAGAGATTCGCCGCCCTGGCCAGATCGAGCTGCTGAAGCTCCGGGTCAACAGCTACGCCAACGAAGACGGGTACATGGTTCTCCCGATGCGCGAGAACAATGGCTCGTTCCTGCGTGTGGGCGACCGTATCACCGTGCGTGGTCAGAACGACCGCAACGGTAAGGTGATCGAGAAGCAAGTGACCATCGTGAACCAGATTATCGGCGACGATGTGATCTGCTCCGATGAACCTGACTACACCTTCAAACCGACCTACCCTGATTCGGACTACCCGGAAGACTTGACCACCGGGACCACAATCTCGATCAGCGTGTACTCGGCGATGACTGCCAACACCCGAAACACCGACGTGATCCCGGTAGTCGATTCGACAGGCTTCTTCGCGGGCGACCTGGTTTATGTGAGCGATGCCCGGACAGAGAAGGACATGATGGCCCCGGTCGTCACGAACCTGCTGTCTGCCGCCAACATGGAAATCGTCCGCATCGCTGCCGTCGAGGGGAACAACCTGCGCCTGGAGCGAGCGATTCGTCGCGAGTACCAGACTGTGTGGGCCGCCGGTGTCGTGAAGATGGATGCCATCAAGAACAGCCACATCAAGCTGCGCAACGTTTCCTGGATCGGTATTCAGCCAGACCGCAAAGCGCACGGCGCTGCGATCAACTACGGCTGGGGTTGCACCGTTCGAGTGGACGACATGCAGGGTCGCGGTGGTCGGAAAGGTATCGGTGTGCGTGTTGCCTACGCCTACGACTGCCACGTTCTCGACTCGAAGGTCTACGACGCCTACAGCTTCCTGTCGGCCGAGGGCTACGGGATCAGCCTGTACTACTCGACCATGTGTTCGATCCGTAACTGCAACGCCTCTGGCAACCGTCACAACTACCTGTTGCAGACCGCGACCAGTTGCGACGTGTTCGACAACAACTCCAACGACGACTACATCAGCGGGATCGACTTGCACGGTGCCGGCTCTGTTGACTGCCGAGTCATGCGTAACCGCCTGTCTCGCTCCAAGTCGTATGCGGACGGTGTAACCAACGGTGGCGCAATTCGTAACGGTAACACTGCGCACACCATCGGCGACCACCGCACTGTGATTGCGGACAACTACATCGAAGGCTACCTGGACGTGAAGTGCGCGGCGATCGACGTGTCCCCGTCCTCGAACGATGTGATCATCCGCAACAACGACATCGTGGATTGTGCCGTTGGCTTCCGTCACTACCGTGTGGGCAGCGGCATCAGCCCTGCGCAGCACAGCAACCGTGTGACCGTGGAGTACAACAACTTCACCCGAGTGCTGAACCCGTTCGACGTGGACAACTACGCCAACTCGGCGTTTGACGAGCTGATCATGATCGGCAACAAGTCCATCGAGAACAGCACCCACTTCGTCGTGAAGGGAATCCCGAAAGTCCTGGCGATGGAGAACAAGATTCTGCGCCCAGTCCCGACGCCGGGTGCGTTCGCGTTCGACTTCACCCGCTGCGGCAACGTGAAGGCTTACGGCAACTATGCCGGTGAAGCTGCACGCGGCATCACAGTAACCTCTTGCACATACGCCAAGCTGGTACGGAACATGCTCGGCGATGTGACTGAGAACGTCGCTGTGAATGACGGTGGCGGCAACGTGACGCTGATCAACCTGCAAAACACCGATGCGCTTCCTTCTGGTGGCGGTGGTGGGACTGCAAGCCCTGCGAAGTTCACCCGGATCATGGGTACGCTTGCTGACAAGATCACAAGCACTGACCCAGTGAACATCGACAACAACGCCCCGAGTATCGCAAACGGTCTCACAGCGGTTCAGGGCAGCGTGAACGTCGCAATCGGGAGTTTGATCGAGGTCTACGCAATCGCCCCTTACGTGAGCTTGGGCGGGTCTACAGGCCCAGTCACTGCGCATCTTTGGGCGGATGGTGTCCGTGTAGCAACATCGGTCGACCGTCTGACGGCTTCTACTGGCGCAGAGAACACCGGTGGTAAAGACTTCGTGCTGGTCGCCAACTTCATCGCGACCGAAGAAGTCCTGGACTTGATCCTCAAGATCGGCCCGAACAGCAACAGCAACACCATCATGCTCAACAGCAAGTTTGGTGGCGCGAGCCAACCCTACATTCTTGTGAAGGAATTCCCGCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9b5cce50ac9ed9859b5536a8e9c47759f6ad223802b8cc96cd22e9c4e7fe1a5e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2827
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50