Protein

View in Explore
Genbank accession
QNH71779.1 [GenBank]
Protein name
putative polysaccharidase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MARKTIDELPVATPEAVATGSLIIADENGLEYRATTAIIGGVHLYFTAEDDETPWIFGRLTSPGRTVEEITVTFVAIPRGGGTTLTKTVKTDSLGNFTYNFATLVRGVTYDITASVAPYLAEVTVKYVAPLSVPITTPVATSTGKVGDTITVEEPNFDGDPISFKYRYLRGPNYIIPGAIDPIYTLTADDDADVITAQVQAVNAGGESIWYSANQIGPVSNKTSVAIDNPVIAGNTTLGGRLELVSPGTATENAVVKSDEWQLDGEKIPSTKAPVKRYLSGAANGSAPTAYPTGNNHFGVSFTGSAYTGSNTYSYSIAANATENDYIVNSTGIAGGNEGPQVYDLYMRHLNTNSAIRIKMYASRYNAGVRQGDEVQMAKVGATAGQEYAALGVTANAVARWTVTADFGEWVAGDYLVFRQQATNISSSGSNNYQWDARAGASYAMLPIGSVQDIQKTLKSFTSKADMSVKSARLKQTLSNGFNEVVLYSNEIVYEAAVTQTAVPANITLPTVVATSDRANVTWQADLGAWSNQPTAYAVQWTDNGVDISGATLMNYKSTTAQEGHDITFYVIAENAIGFSEPATAVARTVQAAATYYNIATGNDLNDGSTELLAKQSLASTESIPSGSTAILAGDFGTRLKLGTGRDYEGLGAGLTSIGSLTTQYAIDHYTDDGSLGRSNVKISKMTINSADRAILARSGSNWVLEDIVIDSAGFGAGVIAENASGIMFYRNNGITMRRCSLLNIKSDGLYLDTVDKVLIEDCLFMPVNTAEGDTIQTRADRTSSSGAPGPHQKGFILSGTFLDMHSKKTASGKGCLVTNMADYVYCHDNRMDGNNFVAGTDEGDSHVFCRNSNRYARMNSYSFGYSIGGYDNQPASYNHQLYDNDWYDINRALTFSGISVTGYSGVKSGRVDIVAHDETIVKCASGIRIDRPTSGMFRGFVFHNVTRPVDRVLTTLPPGGEIQAFISDSHYTYNGSILVPPTVTTRAVITGDRTVGSELTGPNSVFDTTAVLTAFPGAVITRSYQWRRHKPQVQWAGWSEHLGWKCEWIAGATSASYTITDDDQGCLISRVDRIHLSFTEASVAKVVTALSYDASYATSTPIPRSGDLAVPLPVIPSTGTVSFAAAEGAVALNLPALITGETRTLLNPSRAHEVYTSNLLTVDSNGDILKGAGTFTLGQVFGMKLRQKRGIDTIDHVINFTVVA
Physico‐chemical
properties
protein length:1205 AA
molecular weight: 128719,01730 Da
isoelectric point:5,19687
aromaticity:0,08797
hydropathy:-0,13577

Domains

Domains [InterPro]
DC_1007
ATT
111–253
DC_1007 DC_1007 DC_0572
IPR013783
STR
492–596
IPR013783 G3DSA:2.60.40.2700
IPR036116
STR
498–589
IPR036116 DC_2223
IPR003961
STR
503–593
IPR003961
IPR011050
STR
586–947
IPR011050
QNH71779.1
1 1205
Architecture
ATT
ATT
STR
RBD
ATT 111-253 | ATT 486-614 | STR 615-947 | RBD 949-1205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNH71779.1
1 1205
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,9114
Central domain 232 430 200 0,4129
C-terminal 431 1205 774 0,1575
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-430
C-terminal
431-1205

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage P9VFCI
[NCBI] 		2763531 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus P9VFCI >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNH71779.1 [NCBI]
Genbank nucleotide accession
MT778839 [NCBI]
CDS location
range 92435 -> 96052
strand +
CDS
ATGGCACGCAAAACAATCGATGAACTTCCAGTTGCGACTCCCGAAGCCGTAGCTACTGGAAGTCTGATCATCGCTGACGAAAACGGCCTGGAGTATCGAGCAACGACTGCCATTATCGGCGGCGTTCATCTGTACTTCACAGCCGAAGACGACGAGACTCCGTGGATCTTCGGACGACTCACGAGTCCTGGTCGTACTGTCGAAGAAATCACTGTGACCTTCGTCGCTATTCCTCGTGGAGGCGGTACGACTCTCACAAAGACTGTAAAGACAGACTCTCTCGGCAACTTCACATACAACTTCGCGACTCTGGTTCGCGGCGTAACGTACGACATCACCGCGAGTGTTGCTCCATATCTTGCAGAGGTGACCGTCAAGTACGTCGCTCCTCTGTCTGTTCCGATCACTACTCCGGTTGCGACTTCGACAGGTAAAGTCGGCGATACGATCACTGTCGAAGAACCCAACTTCGACGGCGATCCGATCTCGTTCAAGTATCGGTATCTTCGTGGCCCGAACTACATTATTCCCGGAGCGATCGATCCGATCTACACTCTCACAGCTGACGACGATGCTGATGTCATCACAGCTCAGGTCCAAGCAGTCAACGCAGGAGGCGAGAGCATCTGGTACAGCGCAAATCAAATCGGACCTGTCTCGAACAAGACGTCCGTAGCAATCGATAACCCAGTCATCGCTGGTAACACGACTCTTGGTGGCCGACTCGAACTCGTGTCTCCTGGAACCGCAACAGAAAATGCTGTCGTCAAGTCTGACGAATGGCAACTCGACGGAGAGAAGATCCCTTCGACGAAAGCACCAGTGAAGCGTTATCTCAGTGGTGCAGCGAATGGTTCTGCTCCGACTGCGTATCCAACTGGTAACAACCATTTCGGTGTCAGTTTCACTGGTTCTGCTTACACCGGTTCGAATACTTACAGTTATTCGATCGCTGCGAACGCGACTGAAAACGACTACATCGTGAATTCGACCGGAATTGCTGGTGGTAACGAGGGTCCTCAGGTCTACGATTTGTACATGAGGCACTTGAATACGAACTCTGCAATTCGAATCAAGATGTATGCTTCGAGATACAATGCAGGCGTGCGCCAAGGCGACGAAGTTCAGATGGCGAAAGTCGGAGCTACTGCTGGTCAGGAGTACGCAGCTCTCGGCGTCACTGCTAACGCTGTTGCTAGATGGACAGTGACAGCAGATTTCGGCGAGTGGGTTGCCGGTGACTATCTCGTCTTCCGTCAGCAAGCTACGAACATCTCGAGTTCTGGTTCAAACAACTATCAGTGGGATGCACGAGCTGGCGCTAGCTATGCTATGCTTCCGATCGGCTCTGTCCAAGACATTCAGAAGACTCTCAAGTCTTTTACGAGCAAAGCGGATATGAGTGTCAAATCGGCGAGACTCAAACAGACTCTGTCGAACGGCTTCAATGAGGTCGTTCTGTATTCGAATGAAATCGTCTACGAAGCTGCTGTAACTCAGACTGCTGTTCCTGCGAATATCACGCTTCCGACTGTCGTCGCTACTTCTGACAGAGCGAATGTCACTTGGCAAGCCGATCTTGGTGCATGGAGCAATCAGCCGACTGCGTACGCTGTCCAGTGGACTGACAACGGCGTCGACATCTCTGGTGCGACTCTGATGAACTACAAGTCGACAACTGCTCAAGAAGGACACGACATCACCTTCTACGTCATTGCTGAGAACGCTATCGGCTTCTCTGAACCTGCAACGGCTGTAGCTCGTACTGTCCAAGCAGCTGCCACCTACTACAACATTGCCACTGGTAACGATCTCAACGATGGTTCGACTGAACTTCTCGCGAAACAGTCTCTGGCAAGCACTGAGTCTATTCCGTCTGGTTCGACGGCAATTCTCGCTGGTGACTTCGGTACTCGACTGAAACTAGGTACTGGCAGAGATTATGAAGGTCTCGGTGCCGGACTCACGTCTATCGGTTCGTTGACGACACAGTATGCAATCGACCACTACACCGACGACGGTTCGCTCGGTCGATCCAACGTCAAGATCTCGAAAATGACGATCAACTCAGCAGACCGTGCTATCCTCGCACGTTCCGGCAGTAACTGGGTTCTCGAAGACATCGTCATTGACAGTGCTGGTTTCGGTGCTGGCGTCATCGCTGAAAACGCTTCAGGTATCATGTTCTACAGGAACAACGGTATCACGATGCGTCGATGCTCGCTTCTGAACATCAAGTCTGACGGTCTCTATCTCGACACTGTCGACAAAGTTCTGATCGAAGATTGCCTCTTCATGCCTGTCAACACTGCAGAAGGTGATACGATCCAGACTCGCGCTGATAGAACTTCGAGCAGTGGAGCACCTGGCCCTCACCAAAAGGGCTTCATCTTGAGCGGCACCTTCCTCGATATGCACTCGAAGAAGACTGCTTCTGGTAAAGGTTGCTTGGTCACCAACATGGCTGACTACGTATACTGTCATGACAATCGCATGGACGGCAACAACTTCGTCGCTGGTACTGACGAAGGTGACTCTCACGTCTTCTGTCGTAACAGCAACCGCTACGCTCGAATGAACAGCTACTCGTTCGGATACAGCATCGGCGGTTATGACAACCAGCCTGCATCTTACAACCACCAGCTCTACGACAACGATTGGTACGACATCAACCGTGCTCTTACGTTCAGTGGTATCTCGGTGACAGGCTACAGCGGTGTGAAGTCTGGACGTGTCGATATCGTGGCTCATGACGAAACCATCGTCAAGTGCGCTTCTGGTATTCGTATTGACCGTCCGACGTCCGGCATGTTCAGAGGCTTCGTCTTCCACAACGTGACGAGACCTGTCGACCGAGTGCTCACGACTCTGCCTCCTGGCGGTGAGATCCAGGCATTCATCTCCGACAGCCACTACACGTACAACGGATCGATCCTCGTACCTCCGACTGTGACGACTCGTGCTGTCATCACCGGTGACCGAACTGTCGGTTCTGAACTGACTGGTCCGAACAGCGTCTTCGATACGACTGCGGTGTTGACTGCATTCCCTGGTGCTGTGATCACTCGTTCGTATCAATGGCGTCGACACAAGCCCCAAGTCCAGTGGGCTGGTTGGTCTGAGCATCTCGGCTGGAAGTGCGAATGGATCGCTGGTGCAACGTCTGCGAGCTACACGATTACCGATGACGATCAAGGTTGCCTCATCAGTCGTGTCGATCGTATTCATCTGTCGTTCACTGAAGCAAGTGTCGCGAAGGTGGTTACGGCTCTCTCGTATGATGCATCCTACGCAACTTCGACTCCGATCCCTCGCAGTGGTGATCTTGCTGTTCCGCTTCCGGTCATTCCGTCTACTGGAACAGTCTCATTCGCTGCCGCAGAAGGTGCAGTGGCTCTCAATCTCCCTGCTCTCATCACAGGCGAGACTCGGACACTTCTCAATCCTTCGAGAGCTCATGAAGTCTACACCAGCAACTTGCTGACTGTCGACTCCAACGGAGACATCTTGAAAGGAGCTGGCACGTTCACTCTCGGACAGGTGTTCGGTATGAAGCTGCGTCAGAAACGAGGCATCGATACCATCGACCACGTCATCAACTTCACGGTCGTAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
35de3e2767fd705e0e6ddc8b94f357ffcb965ecabb697f9212c766224a46f6ae
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2735
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhizobium leguminosarum bacteriophage vB_RlegM_P9VFCI Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2020-03-12 — GenBank