Protein

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Genbank accession
YP_009798422.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAYYDKETSDELKDKFKDLAVPTGDDFSGLVSYFDKGLQGMDEALPQTITIADGTVTPEKTTFASESGYKNEIDSSKITQERYYNGTSVGSLSKGDATYGTIAIDLIPGEPYLLFGASGSLSFVYDGTSLTKLSSFTGYSSYLNTGSGLSSDYVHKFKAPLGATTIYISARIGLATMLPTMLFRTGDSLFLKDYVPYNTYLNRKLTIKDLQEPLAEKALSLIPKNRIHVKKDGTGDFTSLVTAVRSISDSSIDNVYDIYVYDNHDIIDELGGRTFAESLTNSSDRASLYVPEYVNIIAIGKKELSLKLNPSWNVNYNAIKALSVLEVSKGNNVFENLTFVARNARYAVHDESNGKCPNSKVIYNNCEFIHEGNDDFSGDTTGQWLSCCGFGSGMSSGVNREFYNCKFKSKSYYPFSCHDNANFSYGASLNIFNCEFENEGGNSTYAEDIKLSTYSTGNAIDTASINNTLIKSVLVRNEVAGQPANRWEVKGSGNYQTKLAESGKAVPFTITF
Physico‐chemical
properties
protein length:512 AA
molecular weight: 56173,86610 Da
isoelectric point:5,09723
aromaticity:0,11523
hydropathy:-0,33047

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009798422.1
1 512
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,9840
Central domain 72 501 431 0,8472
C-terminal 502 512 10 0,1879
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-501
C-terminal
502-512

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Semele
[NCBI] 		2079433 Uroviricota > Caudoviricetes > Herelleviridae > Harbinvirus semele >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009798422.1 [NCBI]
Genbank nucleotide accession
NC_047926 [NCBI]
CDS location
range 77954 -> 79492
strand +
CDS
ATGGCTTATTATGATAAGGAAACAAGCGATGAATTAAAAGATAAGTTCAAAGATTTAGCAGTACCAACTGGGGATGACTTTTCTGGACTTGTAAGTTACTTTGACAAAGGATTACAGGGTATGGATGAGGCACTCCCTCAGACTATTACTATTGCGGACGGAACAGTGACGCCAGAAAAAACAACCTTCGCCTCAGAGTCAGGTTATAAAAATGAAATAGATTCAAGTAAAATCACACAAGAAAGATATTATAATGGTACTTCGGTTGGCAGCCTCTCTAAGGGAGACGCTACTTATGGAACGATAGCAATTGATTTAATCCCCGGAGAGCCATATCTTTTATTTGGTGCTTCTGGTTCGCTTAGTTTTGTTTATGACGGCACTAGTCTTACAAAATTATCATCTTTTACTGGATACTCCTCTTATTTAAATACGGGTTCTGGATTATCTAGTGATTATGTGCATAAATTTAAAGCACCTTTGGGAGCAACAACGATTTATATTTCAGCAAGAATTGGGCTTGCAACAATGCTACCTACTATGCTGTTCAGAACAGGCGATTCGTTATTTTTAAAAGATTATGTACCTTATAACACATATTTAAATAGAAAATTGACGATAAAAGACTTACAAGAACCGCTTGCAGAAAAAGCCTTGTCGTTAATTCCTAAAAATAGAATTCATGTAAAAAAAGACGGAACAGGTGACTTCACATCTTTGGTAACCGCCGTTAGGTCAATATCAGACAGTTCTATTGATAATGTATACGATATTTATGTATATGATAATCACGATATTATAGATGAGTTAGGGGGTCGAACTTTTGCTGAATCTTTGACAAATTCGTCAGATAGAGCAAGCCTTTATGTACCGGAATACGTAAACATCATTGCCATTGGAAAGAAAGAGTTAAGTCTGAAGTTAAACCCTTCATGGAATGTGAATTACAATGCTATAAAAGCCTTGTCTGTGTTAGAAGTAAGCAAAGGAAACAATGTTTTTGAAAATCTGACTTTCGTTGCTAGGAATGCTCGTTATGCTGTTCATGATGAATCTAACGGTAAATGTCCTAACAGTAAAGTGATTTATAACAACTGCGAATTTATTCATGAAGGAAATGATGATTTTTCAGGAGACACAACTGGCCAATGGTTGTCATGTTGTGGGTTTGGCTCAGGAATGAGCAGCGGAGTAAATAGAGAATTTTATAACTGTAAATTCAAAAGCAAGTCATACTATCCTTTTTCTTGTCACGATAACGCTAATTTTTCATATGGAGCGTCATTAAATATTTTTAACTGCGAGTTTGAAAATGAAGGTGGAAATTCTACTTATGCAGAGGACATTAAATTGTCAACTTATTCAACTGGAAATGCTATAGACACGGCTTCTATCAATAATACTCTAATTAAATCTGTTCTGGTTAGAAATGAAGTAGCAGGACAACCTGCTAACCGTTGGGAAGTTAAAGGTTCTGGTAACTATCAAACTAAACTGGCAGAAAGCGGTAAAGCTGTTCCATTCACTATTACATTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d2ffad5bd67895573af15dfaec8c1f9ac9461516c7b7eefd5bfe8bba7f953a24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6846
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactobacillus phages that infect wine-derived L. plantarum strains Kyrkou,I. and Hestbjerg Hansen,L. 2018-12-03 — GenBank