Protein

View in Explore
Genbank accession
WKC56025.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSNKIPTDLAAIDEELAVLLQETPETTNRGRLLHLINAKVALSGGGGLPTTEAVTDGLTMLNYRETVSGEPNFYTVAPTRVHRVQQDKWSDALKTQSYVHEVGNNLRLGSISALIEGTELKVDLRYTDRNGTVDELLSIAVPDGHTHVWVSSPTFTRLSRGNTIMTGKIVSGEELEICIFMIADDNTLINRGTTSLATNTGSNVDSLLVNVVPYGGTEVVVGVYCNATNQKELTVVALDFAAGLSQRMLINRKADVDVYYSMNLTVLNTDISSGYIAVSDDTPDGNVTVFRDTGAGGFVALSGFVTSGSFSNADSISSAEASNMNNTVYFGSTRGLFGSETSITTYMLDTSSGDITAIPVHFTQAMADHYDISRYMITTVKYQEDNNATDMMIALPVAGRDSGYDLFSIYPDGTPVFSGYRAGDTSYRYVRPIIGYGGVNAIVPFFSKTTGKDIYLAEYPEYADRTITNLDSLRTAGSIEVYQTFNTNENILGAKGVYDPNPLAQVPYENFYNVLYLSDKDAVLEMKPDLVIVVPKSAPVGTQWTVRFNDSESRKTSETDINLLTYVVAEPTSFDAAAKQPAFNPVDIIGGDLSTVVHIVKTGDGEAKLVYL
Physico‐chemical
properties
protein length:612 AA
molecular weight: 66342,46140 Da
isoelectric point:4,58420
aromaticity:0,08660
hydropathy:-0,10098

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKC56025.1
1 612
Domain Start End Length (AA) Confidence
N-terminal 1 356 356 0,2423
Central domain 357 555 200 0,5990
C-terminal 556 612 56 0,8855
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-356
Central
357-555
C-terminal
556-612

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CAU_VPP01
[NCBI] 		3061015 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKC56025.1 [NCBI]
Genbank nucleotide accession
OQ858564 [NCBI]
CDS location
range 9156 -> 10994
strand +
CDS
ATGTCTAATAAAATCCCAACTGATCTAGCCGCTATTGACGAAGAACTGGCGGTATTACTACAAGAGACGCCGGAGACAACAAACCGCGGCAGACTGCTACACCTGATCAACGCAAAAGTGGCGTTAAGTGGTGGCGGCGGTTTACCCACAACTGAAGCAGTGACCGACGGTCTAACCATGCTTAACTACCGTGAAACTGTGTCCGGTGAGCCGAATTTCTACACTGTTGCGCCAACTCGCGTGCACCGTGTACAACAAGACAAATGGTCTGACGCGCTCAAGACTCAATCTTACGTGCATGAAGTGGGTAACAATCTACGCCTAGGCTCAATTAGTGCGTTGATTGAAGGTACTGAGCTTAAAGTAGACCTACGTTACACGGATCGCAACGGTACAGTAGATGAGCTACTATCTATTGCTGTACCCGACGGGCATACACACGTATGGGTTAGCTCACCGACGTTCACCCGCCTTTCACGCGGTAACACCATTATGACGGGTAAGATTGTCTCTGGTGAAGAATTAGAAATCTGTATCTTTATGATCGCGGACGACAACACCCTAATTAACCGAGGCACGACGTCACTCGCCACCAATACAGGTAGCAATGTTGACAGCCTACTAGTTAACGTCGTTCCGTATGGCGGTACTGAAGTGGTTGTAGGCGTTTACTGTAACGCGACGAATCAGAAAGAGCTTACCGTCGTGGCACTGGACTTCGCCGCGGGTTTATCACAGCGTATGTTGATTAACCGTAAGGCTGACGTTGACGTCTATTACTCAATGAACCTTACGGTACTTAACACCGATATTTCTAGCGGTTATATCGCGGTGTCGGATGATACTCCAGACGGTAACGTCACGGTATTCCGTGACACGGGTGCGGGTGGTTTTGTAGCTCTTAGTGGGTTTGTGACGTCCGGTAGTTTTAGTAACGCCGACTCTATTTCTTCGGCTGAAGCGTCTAACATGAATAACACGGTGTACTTCGGTTCAACGCGTGGTTTATTTGGTTCAGAGACGTCTATCACTACGTATATGCTCGACACCTCATCGGGGGACATTACGGCTATTCCAGTACACTTTACTCAGGCAATGGCGGATCACTATGACATTTCCCGATACATGATCACCACCGTCAAGTATCAAGAGGATAATAACGCCACGGACATGATGATCGCGTTACCAGTTGCGGGTCGAGATTCAGGTTATGACTTATTCAGCATTTACCCTGACGGCACTCCGGTATTCTCGGGTTATCGCGCTGGCGATACGTCTTACCGTTACGTGCGCCCTATTATTGGCTACGGCGGTGTGAACGCTATCGTACCGTTTTTCTCTAAAACGACAGGCAAAGACATTTACCTAGCAGAGTACCCAGAGTATGCGGATCGAACGATCACTAACTTAGACAGTCTACGTACCGCAGGGTCAATCGAGGTTTACCAGACTTTCAACACTAACGAGAATATTCTAGGCGCTAAGGGTGTCTATGACCCTAACCCGCTGGCACAAGTACCATACGAAAACTTTTACAACGTCCTGTATCTATCAGACAAGGACGCGGTTCTAGAAATGAAACCGGATCTTGTTATCGTTGTTCCTAAGTCTGCACCTGTTGGCACGCAATGGACAGTACGCTTTAACGATAGCGAGAGTCGCAAGACTTCAGAGACGGACATTAATCTACTCACCTATGTGGTAGCGGAACCGACGTCATTTGACGCCGCCGCGAAACAACCAGCGTTCAACCCTGTCGATATTATCGGTGGCGATCTGTCCACAGTGGTACACATCGTTAAGACCGGAGACGGTGAAGCGAAACTTGTGTATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cf03be7c701c2a299d13e067c0e8653ff8c135f4a108cbf8bc31457e7d061fc9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4603
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and application of bacteriophage on Vibrio parahaemolyticus cocktail biofilm to inhibit seafood contamination Kim,B., Ha,S., Byun,K., Choi,M. and Ashrafudoulla,M. 2024-07 — GenBank