Protein

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Genbank accession
QVD48960.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,62
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGALQINGWSSETQGLQKRPPTTFTKRLQNKGFLGTKPLVHLINRDAQEQYFVGFSGTGLAVWDLKGNNYTVRGYNGYANCANPRTDLRLITVADYTFVVNRNTVCQMGSTLTNAAYPRLDGRALINVRGGQYGRTLSITINGDGTGSSPQASIKMPNGSAEKVPAGDPYAGMNQVDMTDASWIAAELARQLTVSLGGSGWSFQAGTGWILINAPANDNVRQIATKDGYADTLLSGFIYQVQTFTKLPANAPAGYLVEITGESARSGDNYWVQYDASGKVWKETAKPKIIAGFNNATLPHALVRAADGQFDWTPLTWDGRNAGDDDTNPMPSFIGASINDVFFFRNRLGFLSGENVVMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYITNTVHAIHGSGTENFVSILSDGSPNKVFIYKFLYLDEILQQQSFSHWEFGDAATTRVLAASCIGSYCYLMIDRPEGLCLERMEFTQHTIDYSIEPYRTYMDMKKTIVLGAYNIDTNLTSFDVRTAYGGTPGPESTFYTIDQQGVLIEHEARDWATNPYISFVGNRAGEQMVIGKQYTFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEESGAFEINVNNGSSEFVYVMTGGRLGIQRVLGELSVGTGQFKFPVTGNAVNQRVTITSSNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:808 AA
molecular weight: 88818,37140 Da
isoelectric point:5,65528
aromaticity:0,11139
hydropathy:-0,26114

Domains

Domains [InterPro]
IPR058003
TTP
1–808
IPR058003
QVD48960.1
1 808
Architecture
TTP
TTP 1-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVD48960.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9934
Central domain 141 339 200 0,3045
C-terminal 340 808 468 0,1896
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Pci_PCMW57
[NCBI] 		2834275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas cichorii
[NCBI] 		36746 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVD48960.1 [NCBI]
Genbank nucleotide accession
MW812345 [NCBI]
CDS location
range 24442 -> 26868
strand +
CDS
ATGGGACTCGTTTCGCAATCCGTCAAGAACCTCAAGGGAGGTATCTCGCAACAACCAGACATCCTTCGGTTCTCCAACCAAGGCGCTCTGCAAATCAACGGGTGGTCCTCGGAGACTCAGGGTCTTCAGAAGCGTCCACCGACCACCTTCACCAAGCGACTCCAGAACAAGGGTTTCCTCGGCACCAAGCCGCTGGTTCACCTCATCAACCGGGACGCCCAAGAGCAATACTTCGTGGGCTTCTCTGGGACTGGTCTGGCAGTCTGGGACCTGAAGGGCAACAACTACACCGTGCGTGGCTACAACGGTTACGCCAACTGCGCCAACCCTCGCACCGACCTGCGCCTCATCACTGTGGCCGACTACACCTTCGTGGTAAACCGGAACACCGTGTGCCAGATGGGATCGACCCTGACCAATGCGGCCTACCCACGGCTGGATGGTCGAGCGCTCATCAACGTGCGTGGTGGTCAGTACGGTCGAACCCTGTCGATCACCATCAACGGTGACGGCACTGGGTCCAGTCCTCAAGCGTCCATTAAGATGCCCAACGGTTCTGCCGAGAAGGTGCCTGCTGGTGATCCCTATGCGGGCATGAACCAAGTGGACATGACGGACGCCTCATGGATCGCCGCTGAGCTGGCTCGGCAACTGACAGTCTCTCTGGGAGGCTCTGGGTGGTCGTTCCAAGCAGGCACCGGGTGGATTCTCATCAATGCCCCTGCCAACGACAACGTGCGCCAGATCGCCACCAAGGACGGTTACGCTGACACCCTACTCAGTGGGTTCATCTATCAGGTCCAGACCTTCACGAAGCTCCCTGCGAACGCCCCTGCGGGCTACCTCGTGGAGATCACTGGGGAGTCTGCACGGTCTGGTGACAACTACTGGGTCCAATACGACGCCTCTGGGAAGGTCTGGAAGGAGACAGCGAAGCCCAAGATCATCGCAGGGTTCAACAACGCAACGCTTCCACACGCGCTCGTGAGGGCCGCTGACGGGCAGTTCGACTGGACTCCCCTGACGTGGGATGGACGCAACGCTGGTGACGATGACACGAACCCAATGCCGTCCTTCATCGGCGCTTCGATCAACGACGTGTTCTTCTTCAGGAACCGTTTGGGTTTCCTCTCGGGCGAGAACGTCGTGATGTCTCGGACCTCGAAGTATTTCAACTTCTTCCCGAGCAGCGTGGCGACCCTGAGCGATGACGATCCAATCGACGTGGCCATCTCGCACAACCGTATCTCGATCCTGAAGTACGCTGTGCCATTCTCCGAGCAGCTCCTGCTGTGGTCCGACCAAGCTCAGTTCGTTCTGTCGAGCAACGGCATCCTGTCGAGCAAGACCATCGAGCTGGACCTGACCACTGAGTTCGACGTGAGCGATGGTGCCCGTCCCTATGGGATTGGTCGCGGGGTTTACTTCGCAGCTCCACGGGCCTCCTTCACGTCCCTCAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACATCACGAACACCGTCCACGCTATCCACGGGTCTGGTACGGAGAACTTTGTGAGCATCCTTTCGGACGGCTCGCCAAACAAGGTATTCATCTACAAGTTCCTGTACCTCGACGAGATTCTCCAGCAGCAGTCCTTCAGTCACTGGGAGTTCGGCGATGCGGCTACCACCCGTGTCCTCGCAGCCTCGTGCATTGGCTCCTACTGCTACCTGATGATCGACCGTCCAGAGGGCCTGTGCCTTGAGCGCATGGAGTTCACGCAACACACCATCGACTATTCCATCGAGCCTTACCGGACCTACATGGACATGAAGAAGACCATCGTTCTCGGTGCTTACAACATCGACACGAACCTGACTTCGTTCGACGTTCGGACTGCCTACGGTGGAACGCCGGGGCCTGAGTCCACGTTCTACACCATCGACCAACAAGGGGTTCTCATCGAACACGAGGCGCGGGACTGGGCGACCAATCCGTACATCTCGTTCGTGGGCAACCGAGCTGGTGAGCAGATGGTGATCGGCAAGCAGTACACGTTCCAGTACGAGTTCAGCAAGTTCCTCATCAAGCAGACCGCTGACGATGGGTCCACCTCGACCGAGGACATTGGACGCTTGCAGCTCCGTCGTGCGTGGCTGAACTACGAGGAATCTGGTGCCTTCGAGATCAACGTCAACAACGGCTCCAGTGAGTTCGTCTACGTGATGACTGGTGGTCGCCTCGGGATTCAACGAGTCCTCGGTGAGTTGTCCGTGGGTACTGGTCAGTTCAAGTTCCCTGTGACCGGCAATGCCGTCAACCAACGAGTCACCATTACCAGCTCCAACCCGAACCCACTCAACGTGATCGGATGCGGCTGGGAAGGTAACTACATCCGCCGTTCTTCCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9b77833cabf72ba913ed69bd7eb853061a4528e07d056977e82acbfd607af6d9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2972
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a virulent bacteriophage specific for Pseudomonas cichorii Alves,M.K., de Souza,W.V., Novello,J.C.L., Sillankorva,S., Henriques,J.A.P. and Ely,M.R. 2023-06-16 — GenBank