Protein

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Genbank accession
YP_009997904.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,61
Protein sequence
MLKHQDGFDHYAEIGKKGTVVEPYLKAAGYDIRNSTDDTFQIDTGRRDGAMSLKFTVERNSSTNASLSWGFTPSGNYACFGFAMKANGSRMRVCRIDNLVDIEWSSDDGKLEIDGQKGVNPLILNAWYYFEVELDKAAKKVTVWVNNEKQIEATLTAAWPERVVISWGQVGTAPDAGIQYLDDFYAMDDSGSINTTRLGPIEVATRAPTADITKEWEVVNGTTENHYQVAAQLEPGRPNAPYLQSNKSGAKDVFRSNAVLPTNNKVFGVSVIAYARKGDLDDRKLGMMVQTEGGTEKEVQVPLTEDYKYYQITHEQTPGNTDWNKQNVEALQFGIVTR
Physico‐chemical
properties
protein length:338 AA
molecular weight: 37621,50520 Da
isoelectric point:5,05648
aromaticity:0,09763
hydropathy:-0,53639

Domains

Domains [InterPro]
DC_1212
STR
1–338
DC_1212
G3DSA:2.60.120.560
RBD
15–184
G3DSA:2.60.120.560
YP_009997904.1
1 338
Architecture
STR
STR 1-338
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009997904.1
1 338
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,0503
Central domain 145 327 184 0,1003
C-terminal 328 338 10 0,9916
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-327
C-terminal
328-338

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage Kokobel1
[NCBI] 		2783540 Uroviricota > Caudoviricetes > Casjensviridae > Kokobelvirus kokobel1 >
Host Providencia stuartii
[NCBI] 		588 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009997904.1 [NCBI]
Genbank nucleotide accession
NC_052979 [NCBI]
CDS location
range 9316 -> 10332
strand -
CDS
ATGCTAAAACACCAAGATGGTTTCGACCACTACGCAGAAATTGGGAAAAAAGGTACGGTCGTTGAGCCGTACTTAAAGGCCGCTGGCTACGATATTCGTAACTCGACGGATGATACGTTCCAGATCGACACTGGTCGCCGTGACGGGGCTATGAGCCTCAAATTTACGGTAGAACGTAACTCATCGACCAATGCGTCATTATCGTGGGGATTTACCCCGTCAGGTAATTACGCTTGCTTCGGGTTCGCGATGAAGGCCAACGGGTCGCGTATGCGCGTTTGTCGTATCGATAACCTTGTCGATATTGAGTGGAGTTCCGATGACGGTAAATTGGAAATTGACGGACAGAAAGGCGTAAACCCGCTGATCTTGAACGCATGGTACTACTTCGAAGTAGAGCTAGATAAAGCCGCTAAGAAAGTGACTGTGTGGGTCAACAATGAAAAACAAATTGAAGCGACATTGACCGCCGCGTGGCCCGAACGTGTGGTAATTTCTTGGGGACAAGTAGGGACTGCGCCTGATGCGGGCATTCAGTATCTTGATGACTTCTACGCGATGGACGACTCCGGGTCAATCAACACAACCCGCTTAGGTCCGATCGAGGTGGCGACACGAGCGCCTACCGCAGACATCACTAAAGAGTGGGAAGTCGTAAACGGTACGACAGAAAACCACTATCAGGTCGCCGCACAGTTGGAACCGGGTCGCCCGAATGCGCCGTACCTTCAATCTAATAAGTCCGGAGCAAAAGACGTTTTCCGTTCGAATGCGGTATTGCCAACGAACAATAAAGTTTTCGGCGTTTCCGTTATCGCATATGCCCGTAAAGGGGACCTAGACGATCGTAAACTCGGCATGATGGTTCAGACCGAAGGCGGAACAGAAAAAGAAGTGCAAGTACCGCTAACCGAAGACTATAAATACTATCAGATCACGCATGAGCAAACACCGGGTAATACCGACTGGAACAAACAGAACGTCGAAGCCCTACAGTTCGGTATCGTAACTCGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d0b9b3e7e32018157c250ad6ec01050b221599c2a106d1ae44db6b11cf9ea5d9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8725
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50