Protein

View in Explore
Genbank accession
AMO44110.1 [GenBank]
Protein name
gene transfer agent host specificity protein
RBP type
TSP
Evidence RBPdetect
Probability 0,64
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MASSIGRIALGVVGALIGAPFGLSAIGFSIGSAIGGALFAPDGPKTEGPRLGDTNVSASSLGKVIAEHYGVTRSSGNMIWSAGLKEVKVTEKQGGGKGGGGGATSTTYEYYASFATVFGRGPGTEVRKIWADGKIIYDATGESETNNEKYRFRFYSGGPNQVIDPLIQESVNRRLAGLPDVNEGNQEQADYQSLSDVISSAYASGDARSALYGDLLTVRKTSAEAVEGIPDYRFTPAYRGLCFILFDDMPLEDFGNRIPNLTAEIVWDGATANNGSTTPGEIPTITGTAVTEISNLAVPSGLMAIDYNNEKLFGLSGDVMRRFGSDSNAEDRQATVGTPTPTVLVGTPTSVEEYGIAIDRLLAVGSEGTVYAAATLSYINFFGGTISTNSLLALSGTGLTIIGPVTAPILPSSTLRFGTHLRMSGSLPASLIFGGAGGTTGEHMAFVDTADTIHVMRINSGDLRATSSITSAVDGTHTNNGPMVAGASISSGVTQFFHCAYAGNRVKIVRYEVTNNAIKQGWLPTDSAEITVVEKKSSSLTLTLTSNINRVSALVWNSTTDDLIMIATLNSGSAAVLRVDEDLAVDYLEEIAAAGPLETSGLSRSDTSNGTLAYASARDIIAISVADGTHIRYVNALAANASSAAQFYNGTNGSLLLWEGDAPYIYRVGRSSGASRGHDIADLLPRVIQDVCERAGMLPDEFDVSGLSDLAVRGYSISRPSTGRQVMENLLQAYFADGIETDWKVVFADRDTNSVRTIDEAELGEIGGPTGPVNWLESRTPEYEIPAEININYSDPMRDYQTGTAHKKRISNPIPSMYSDSTQNLELPMVLRDSEAMDIAERLLYLSWMSRDRSKAMLNWTHADLDPGDVISVRFKDGRVITDRISKATIGANFEIEIESARSGDPVYVSAPQTIIPTGSIPSNNISTPVNSRVFVLDIPLLYDYHDTSRSASRFYTAVGADSDKWRSATIYGSWDNGTFLSFANAAVDATWGTTTTKVQPPRSLWTTDRDNEIRVALSIDNGDLVSITREQLINGANRALIWNPSTGVGEIIQFQNAAIDGSTYVLTGLVRGLRGTEYAVDKHSNGAYFILLQDSVLTLSDNELSRIGTTGYFKAVSAGQLISAVGSSTTTFRGNDLKPWAPSRVRRTDDGTDITVTWNRRTRVGGAWNMLTTYETVALSEDFEQYEVYLLPAGDAAQDAFDPSNPATYHTMTSVTGATSCVFSGAVLSAHGYTVDDTINVALYQISGQVGRGFARIGGLAP
Physico‐chemical
properties
protein length:1263 AA
molecular weight: 134724,48930 Da
isoelectric point:4,80860
aromaticity:0,08076
hydropathy:-0,13048

Domains

Domains [InterPro]
DC_1879
ATT
1–310
DC_1879 IPR032876 IPR056490 DC_0263
DC_2254
STR
748–990
DC_2254
AMO44110.1
1 1263
Architecture
ATT
ATT
STR
RBD
ATT 1-310 | ATT 718-874 | STR 875-990 | RBD 991-1263
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMO44110.1
1 1263
Domain Start End Length (AA) Confidence
N-terminal 1 279 279 0,7358
Central domain 280 478 200 0,7110
C-terminal 479 1263 784 0,2172
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-279
Central
280-478
C-terminal
479-1263

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage DSS3P8
[NCBI] 		1735562 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ruegeria pomeroyi DSS-3
[NCBI] 		246200 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Ruegeria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO44110.1 [NCBI]
Genbank nucleotide accession
KT870145 [NCBI]
CDS location
range 44612 -> 48403
strand +
CDS
ATGGCCTCTAGTATTGGTCGCATTGCCCTTGGCGTCGTCGGGGCACTCATCGGGGCACCGTTTGGTCTTTCGGCTATCGGTTTCTCTATCGGCTCTGCCATTGGTGGGGCGCTCTTCGCCCCTGATGGGCCGAAGACAGAAGGCCCTCGCCTTGGGGATACGAACGTCTCTGCATCAAGTCTCGGAAAGGTAATTGCAGAACACTACGGGGTAACGCGGTCTTCTGGGAACATGATTTGGTCCGCAGGACTCAAGGAAGTGAAGGTAACTGAAAAGCAGGGCGGCGGCAAGGGCGGCGGCGGAGGGGCGACCAGCACCACATACGAATACTATGCATCGTTCGCGACAGTATTCGGGCGTGGCCCCGGCACTGAGGTTCGGAAGATTTGGGCTGACGGTAAGATCATCTACGACGCAACCGGGGAAAGCGAAACAAACAACGAGAAGTACCGGTTCCGCTTCTACTCAGGAGGGCCAAATCAGGTAATCGATCCTCTTATTCAGGAATCTGTTAACCGTCGCCTCGCAGGGCTTCCTGATGTCAACGAAGGAAATCAGGAACAGGCTGACTACCAGTCGCTCTCTGATGTGATCTCTTCGGCATACGCCTCAGGCGATGCACGCTCCGCACTCTATGGTGATCTTCTCACTGTTCGCAAGACATCGGCAGAGGCAGTGGAGGGCATTCCGGACTACCGGTTTACCCCCGCATACCGTGGGCTGTGCTTCATCCTGTTCGACGACATGCCATTGGAAGATTTCGGTAATCGCATCCCGAACCTCACGGCGGAAATCGTATGGGACGGGGCAACTGCGAACAACGGATCGACGACGCCGGGTGAGATTCCTACCATCACAGGTACCGCAGTAACCGAGATCAGTAATCTCGCTGTTCCCAGCGGGCTTATGGCGATTGACTACAACAACGAGAAGCTGTTCGGACTCTCGGGTGACGTCATGCGCCGGTTCGGTTCTGACAGCAACGCAGAAGATCGGCAGGCCACTGTAGGTACGCCGACCCCAACTGTTCTTGTGGGGACACCTACCTCTGTAGAGGAATATGGAATCGCCATCGACCGCCTGCTCGCGGTTGGATCAGAGGGAACAGTATATGCTGCGGCAACGCTGTCCTACATCAACTTCTTCGGCGGAACCATCTCTACCAATTCACTTTTGGCACTGTCCGGCACAGGTCTCACGATCATCGGGCCTGTAACCGCCCCTATTCTTCCGTCCTCTACCCTTCGGTTTGGGACACATCTTCGCATGTCTGGATCACTCCCAGCAAGTCTGATCTTTGGCGGCGCGGGCGGGACGACCGGGGAGCATATGGCTTTCGTCGACACCGCTGACACAATTCACGTCATGCGCATCAACAGCGGCGATCTTCGGGCGACGTCTAGCATCACATCTGCGGTGGATGGAACACACACAAACAACGGGCCTATGGTCGCGGGGGCATCTATCTCTTCCGGGGTGACCCAGTTCTTCCACTGCGCATACGCGGGTAACCGGGTAAAGATCGTGCGTTACGAGGTGACCAACAATGCGATCAAGCAGGGGTGGCTTCCAACAGATTCCGCTGAGATCACTGTGGTGGAGAAGAAGTCCAGCTCCCTCACGCTCACCCTTACCAGCAACATCAACCGGGTGTCGGCTCTCGTATGGAATAGCACAACAGACGATCTTATCATGATCGCGACACTCAACAGCGGAAGTGCCGCAGTCCTGCGCGTGGACGAAGACCTCGCCGTGGATTACCTTGAGGAAATCGCGGCTGCTGGACCTCTTGAAACCAGTGGGCTGTCTCGGTCGGATACATCAAATGGAACGCTGGCGTACGCATCAGCGCGTGACATTATCGCCATCAGTGTTGCTGATGGGACACACATTCGGTATGTCAACGCCCTCGCCGCTAATGCAAGCTCTGCAGCGCAGTTCTACAACGGAACCAATGGAAGTCTTCTTCTCTGGGAAGGAGATGCTCCATACATCTACCGTGTCGGACGGTCCAGCGGAGCCAGCCGTGGACATGACATCGCTGATCTTCTCCCGCGCGTTATTCAGGACGTCTGCGAACGCGCAGGCATGCTTCCTGACGAGTTCGATGTTTCAGGGCTGTCCGATCTCGCAGTTCGTGGCTACAGTATCAGCCGTCCATCGACTGGTCGGCAGGTAATGGAGAATCTTCTTCAGGCATACTTTGCTGATGGCATCGAGACGGACTGGAAGGTGGTATTCGCAGACCGTGACACGAATTCCGTACGCACGATTGATGAGGCTGAGCTTGGCGAGATCGGCGGACCGACAGGACCGGTAAACTGGCTTGAGAGCCGTACACCTGAATACGAGATTCCGGCTGAGATCAACATCAACTACTCTGATCCAATGCGTGACTACCAGACAGGCACTGCCCACAAGAAGCGCATCAGCAACCCGATCCCTTCGATGTATTCTGACAGCACACAGAACCTTGAGCTTCCTATGGTGCTCCGGGATTCCGAAGCGATGGATATTGCAGAGCGTCTTCTGTACCTTAGCTGGATGAGCCGTGATCGCTCTAAGGCGATGCTCAACTGGACCCACGCAGACCTCGATCCGGGTGACGTCATTTCTGTGCGCTTCAAGGATGGTCGTGTCATCACTGACCGTATTTCGAAGGCCACCATCGGAGCGAACTTCGAAATTGAAATCGAAAGTGCACGCTCTGGCGATCCTGTATACGTGTCCGCGCCACAGACCATCATCCCCACAGGAAGCATCCCCAGCAACAACATCTCGACACCGGTAAACAGCCGTGTGTTCGTTCTCGATATTCCGCTTCTCTATGACTACCACGACACGTCACGTAGCGCGTCTCGGTTCTATACAGCGGTCGGGGCGGATTCCGATAAGTGGCGTTCTGCGACCATTTATGGTTCGTGGGACAATGGCACGTTCTTGTCGTTCGCCAACGCTGCAGTGGATGCAACGTGGGGCACCACCACGACCAAGGTGCAGCCGCCGCGCTCCCTCTGGACCACGGATCGCGACAATGAAATTAGGGTCGCGCTTTCCATCGACAACGGTGACCTCGTATCTATTACGCGCGAGCAGTTGATCAATGGTGCTAACCGTGCCCTGATCTGGAACCCAAGCACAGGTGTTGGAGAAATCATCCAGTTCCAGAATGCAGCTATTGATGGTTCCACTTATGTCCTGACAGGCCTCGTGCGCGGTCTTCGTGGCACAGAATACGCCGTGGATAAGCATTCGAATGGGGCCTACTTCATCCTTCTGCAGGACTCGGTACTCACCCTCAGTGACAACGAACTCTCCCGCATCGGTACCACGGGTTACTTCAAGGCCGTATCTGCAGGTCAGCTCATTTCCGCAGTCGGATCATCTACCACAACTTTCCGCGGCAACGACCTCAAGCCGTGGGCACCATCACGTGTTCGTCGCACCGATGATGGGACGGACATCACTGTCACGTGGAATCGCCGCACTCGCGTCGGTGGTGCATGGAACATGCTCACCACTTACGAGACTGTGGCGCTCAGCGAAGACTTTGAACAGTACGAAGTCTACCTGCTTCCTGCCGGTGATGCTGCGCAGGATGCGTTCGATCCGTCCAATCCTGCCACATACCACACGATGACATCGGTAACAGGTGCTACCTCTTGCGTATTCAGCGGCGCTGTTTTGTCGGCGCACGGGTACACGGTTGATGATACGATCAACGTCGCCCTTTACCAGATCAGCGGACAGGTCGGACGCGGCTTCGCTCGTATCGGCGGGCTTGCCCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
842142be11fde45e0c3c95b4333f82616f13106932cdf24e5c258861f677582f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2843
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel CbK-like bacteriophage has been isolated from Rosebacter Zhan,Y., Huang,S., Voget,S., Simon,M. and Chen,F. 2016 — GenBank