Protein

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Genbank accession
AGH07719.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,74
Protein sequence
MSKQGISTGSAPNDGTGDTLLAGTIKINNNFNEIYDIFGDGSNLVSFVSFASTAGYSTNCGIASTSVLAGLAASVTDNIDINTSGVVTSSYADVGKITIQQPGAITDGPIEVGFAATMFRIKADGMVGIGTSLPTSQLEVASFSNEKPTIWSVAKGNGHGLRVSDAAISDNKSFVVTNEAYTGIGSTAPRCRLDVRGDIQVSGASTLMDQVNFNSDITEKVVGNFSDQLTVSAGGTFTFDLSQGTVVLGGITTSVTSWNFTNVNPDNSKATTVTLINNAGIGYTYGDSCTVNGASIANGIKWVGGNPPPATANDDILTFSIVRDSTGVTRVYCSSSINII
Physico‐chemical
properties
protein length:340 AA
molecular weight: 34947,30230 Da
isoelectric point:4,40419
aromaticity:0,07059
hydropathy:0,06912

Domains

Domains [InterPro]
IPR036240
STR
1–85
IPR036240 DC_1864
DC_0533
ATT
1–65
DC_0533
IPR008987
ATT
3–97
IPR008987
G3DSA:1.20.5.960
Unmapped
13–43
G3DSA:1.20.5.960
AGH07719.1
1 340
Architecture
ATT
STR
ATT 1-97 | STR 98-340
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07719.1
1 340
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,3407
Central domain 72 270 200 0,2011
C-terminal 271 340 69 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-270
C-terminal
271-340

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6a
[NCBI] 		682650 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07719.1 [NCBI]
Genbank nucleotide accession
HQ317391 [NCBI]
CDS location
range 187657 -> 188679
strand +
CDS
ATGTCTAAACAAGGGATTAGTACTGGTTCGGCTCCCAATGATGGGACTGGCGATACCCTATTGGCAGGGACTATTAAGATTAATAATAACTTCAACGAAATCTACGATATTTTCGGAGACGGATCTAACCTTGTAAGTTTTGTTTCTTTCGCTAGCACTGCTGGATATTCTACCAACTGTGGTATTGCATCCACATCAGTTCTTGCTGGTCTTGCAGCGAGTGTTACAGATAACATTGACATCAATACATCTGGTGTTGTAACATCAAGTTATGCAGATGTTGGTAAAATAACAATTCAACAGCCAGGTGCAATTACAGATGGACCTATTGAAGTTGGATTTGCTGCAACAATGTTCCGAATCAAAGCAGACGGTATGGTCGGCATTGGAACATCATTACCTACTTCACAATTAGAAGTTGCATCATTCTCAAACGAAAAACCAACTATATGGTCAGTTGCAAAAGGTAATGGACATGGATTGCGAGTATCCGATGCAGCGATATCAGATAATAAGTCTTTTGTAGTTACTAACGAAGCCTACACTGGTATTGGTTCTACTGCTCCTAGATGTAGATTGGATGTGCGAGGAGATATCCAAGTAAGTGGTGCAAGTACATTAATGGATCAGGTCAACTTTAACTCTGATATTACAGAGAAAGTTGTAGGAAACTTTAGTGATCAGTTGACTGTAAGTGCAGGCGGTACGTTCACATTTGACTTATCACAAGGAACAGTTGTTCTAGGTGGTATAACTACATCTGTTACTTCTTGGAACTTCACTAATGTCAACCCTGACAACAGTAAGGCAACAACAGTTACACTAATCAATAATGCTGGAATCGGATACACATACGGAGATTCCTGTACAGTGAATGGAGCATCTATTGCAAACGGTATCAAATGGGTTGGTGGAAACCCACCGCCTGCAACGGCCAATGATGATATTCTAACCTTTAGTATAGTGCGTGATAGTACTGGTGTTACCAGAGTCTATTGCAGCAGTTCTATTAACATTATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e388fc9a7955b9741ac5663f53eea5bf57bd6546bbf103ae154ed69212b3de9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7153
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6a Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank