Protein

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Genbank accession
AQT27907.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence RBPdetect
Probability 0,67
TF
Evidence RBPdetect2
Probability 0,74
Protein sequence
MCDKDTCNDASCCGECEPWNCLEQQVNDILATKEGQLQGYVDESKNSAAESKASAEASAQSAAESKEFRDEAETAASTAVAAEGVVLGVANTLQDTADKLGTAIAGIAVVTWYYTAVSENQTVIPVPDDKNQIAIQAIYIEGARKEPGPSRDFTYDPVTKQITLVEGIPLGQEIAIILGVYPENSDDITHILASSTGAGLIGTTNGNTVQDELNANSGSFQDGAKLLNKNNRIIDRSTNPAQLYIWDGLFPKAVPVGSTPETSGGVGVGAWISVGDAALRSELAMNDGAYLSGYGSMTVGSFLDEMTNATLITAVVTDLNANNRDAIYAHDGYVYVPRGVTVRCNFLPADDVRKFVGHGRVTTTDPWGYTHTFDVELANTGSKITARQIVAQGIKQLQGPGWQQTTIGTIGDSITDGSAG
Physico‐chemical
properties
protein length:420 AA
molecular weight: 44288,49810 Da
isoelectric point:4,38049
aromaticity:0,06429
hydropathy:-0,20643

Domains

Domains [InterPro]
DC_0071
STR
16–419
DC_0071
G3DSA:2.10.10.80
ATT
214–285
G3DSA:2.10.10.80 IPR049297
IPR040775
RBD
215–276
IPR040775
AQT27907.1
1 420
Architecture
STR
ATT
STR
STR 16-213 | ATT 214-285 | STR 286-419 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PatP_CB4
[NCBI] 		1958919 Uroviricota > Caudoviricetes > Schitoviridae > Cbunavirus CB4 >
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AQT27907.1 [NCBI]
Genbank nucleotide accession
KY549659 [NCBI]
CDS location
range 35611 -> 36873
strand -
CDS
ATGTGTGATAAAGACACTTGCAACGACGCCTCTTGCTGCGGTGAATGTGAACCGTGGAACTGCTTAGAACAGCAGGTCAACGACATTCTTGCTACCAAAGAGGGGCAACTCCAGGGTTACGTGGATGAATCCAAAAACTCAGCCGCTGAGTCGAAAGCCTCGGCAGAGGCGTCGGCTCAATCGGCTGCGGAATCGAAGGAGTTCCGCGACGAAGCAGAAACAGCAGCAAGCACGGCAGTAGCCGCAGAGGGTGTTGTGCTCGGTGTAGCCAATACACTACAGGACACCGCAGATAAGCTCGGTACTGCCATTGCTGGTATTGCTGTGGTTACTTGGTACTACACGGCTGTATCTGAAAATCAGACTGTAATTCCTGTGCCTGATGATAAAAACCAGATTGCTATTCAAGCAATCTATATTGAAGGTGCCCGTAAGGAACCGGGGCCAAGTCGTGATTTTACTTACGATCCAGTTACAAAACAAATTACCCTAGTTGAAGGTATCCCGCTAGGGCAGGAAATAGCCATTATTCTCGGTGTTTACCCTGAGAACTCGGACGATATTACTCATATCCTGGCTTCCTCTACGGGTGCAGGTTTGATTGGTACTACCAATGGTAATACTGTTCAAGATGAGTTGAATGCTAACTCTGGGTCTTTCCAAGATGGTGCTAAGTTACTCAACAAAAACAATCGTATTATCGACCGATCAACTAATCCTGCTCAATTGTATATTTGGGATGGCCTATTTCCTAAAGCAGTTCCTGTTGGTTCAACACCTGAAACATCTGGTGGCGTTGGAGTTGGTGCGTGGATAAGTGTTGGTGATGCAGCACTGCGGAGCGAACTGGCTATGAATGACGGCGCGTATCTGTCTGGCTATGGCTCAATGACGGTCGGTTCATTTCTAGATGAGATGACAAACGCAACGCTCATCACTGCTGTTGTTACTGATCTGAATGCAAACAATCGTGATGCAATTTACGCTCACGATGGTTATGTATACGTCCCGCGTGGCGTTACTGTCCGCTGCAATTTTTTGCCTGCTGACGATGTGCGTAAATTTGTCGGTCACGGAAGAGTAACAACAACCGATCCGTGGGGGTATACGCACACGTTTGATGTAGAACTGGCTAACACTGGCTCAAAAATCACGGCTCGGCAGATTGTGGCTCAAGGCATCAAACAGCTGCAAGGGCCTGGGTGGCAACAGACGACAATCGGAACTATTGGGGATTCGATCACAGATGGCTCAGCGGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
682a1fd726fe0b89bbbf49c14f2809c42d7a210fcf073813ab90c38c661f2928
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7250
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel N4-Like Bacteriophages of Pectobacterium atrosepticum Buttimer,C., Hendrix,H., Lucid,A., Neve,H., Noben,J.P., Franz,C., O'Mahony,J., Lavigne,R. and Coffey,A. 2018 29757952 GenBank