Protein

View in Explore
Genbank accession
YP_007112630.1 [GenBank]
Protein name
membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAQGIYIDLNDGRNPMTITAGMRALNFAGNFNVSSGGFSKSFPIQGNEGASRFLLPNNGAYSFELDRGVEVYYIKGFSSTESSGTISIGYENGYPDRVTQFSGTVVEVLRSSGQGLYVADSTDFTSITTTDRLLVCKFAQTISFHDSYTLPIYGIPFGRWDNSGVSVEYDGVNRLICTNINTNDTGHTPGSVTMDLVIFQMVAPVPGPGLNIFNHKGACTLSTVTRPLIVSGFISLSGSNQYIGDSYFPILRCGFNTRAIPAYKELRNKGVVMSGGYVRSGTGSRIVRYEIGNRPDVTIPTPLPYLPNMY
Physico‐chemical
properties
protein length:310 AA
molecular weight: 33653,54650 Da
isoelectric point:6,82127
aromaticity:0,11290
hydropathy:-0,08742

Domains

Domains [InterPro]
IPR045604
STR
4–290
IPR045604
YP_007112630.1
1 310
Architecture
STR
STR 4-290 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007112630.1
1 310
Domain Start End Length (AA) Confidence
N-terminal 1 79 79 0,1802
Central domain 80 278 200 0,0300
C-terminal 279 310 31 0,9929
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-79
Central
80-278
C-terminal
279-310

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HK578
[NCBI] 		1147142 Uroviricota > Caudoviricetes > Dhillonvirus >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007112630.1 [NCBI]
Genbank nucleotide accession
NC_019724 [NCBI]
CDS location
range 20388 -> 21320
strand -
CDS
ATGGCACAAGGTATCTACATTGATCTTAATGACGGACGCAACCCGATGACAATCACCGCGGGTATGCGTGCCTTGAATTTTGCGGGGAACTTCAATGTTTCAAGTGGCGGGTTTAGCAAGTCATTCCCTATTCAAGGTAATGAAGGGGCTTCAAGGTTTCTTCTGCCGAACAATGGCGCATACTCCTTCGAACTAGATCGTGGTGTTGAGGTTTATTATATAAAGGGCTTTTCTTCAACAGAATCCAGCGGAACAATATCTATTGGCTATGAGAACGGCTATCCAGACCGCGTAACGCAGTTTTCAGGGACTGTAGTTGAGGTTCTTAGGTCATCAGGGCAGGGGCTTTACGTTGCCGACAGCACGGATTTCACATCGATAACCACAACTGACAGGTTGCTTGTCTGCAAATTTGCTCAAACTATATCATTCCATGATAGTTACACCCTTCCAATATACGGCATACCGTTCGGCAGGTGGGATAATTCTGGTGTTTCAGTTGAGTACGACGGTGTTAATCGGTTGATATGCACAAACATAAACACAAATGATACCGGGCACACACCCGGAAGTGTTACTATGGATTTGGTTATTTTCCAGATGGTTGCGCCCGTGCCGGGGCCGGGGTTAAACATATTTAACCACAAAGGCGCCTGTACACTTTCAACAGTTACCAGACCACTTATTGTGTCTGGGTTTATAAGTCTGTCGGGTAGCAATCAGTATATTGGAGACTCCTACTTCCCAATACTAAGGTGTGGGTTCAATACAAGGGCTATACCCGCCTACAAGGAACTAAGAAACAAAGGCGTGGTTATGAGCGGCGGATATGTAAGGTCGGGAACTGGCTCACGAATTGTAAGGTACGAAATCGGCAACAGACCCGACGTTACGATCCCAACTCCGCTGCCGTACCTCCCCAACATGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8b3b5b6b724ed8cf4999a0fde7ac33815c5579183389b9b6a2ea998daa64b5dc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8430
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes of several lambdoid coliphages Refardt,D., Gencoglu,M., Kunzli-Gontarczyk,M., Bruggmann,R. and Kropinski,A.M. 2012-04 — GenBank