Protein

View in Explore
Genbank accession
AHH02868.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MLEDGTTKMDSRTVHPMEIIVEVFCPSIDVVDQINQLLLDRDTLYKVITRGMVFERMMCTSEALNQTPEMISATPARLTFSQVLVQNPKPIMFRNAGDSSIIDRGLALAEDVVGSASDLFDYAVNGVQNAADLF
Physico‐chemical
properties
protein length:134 AA
molecular weight: 14830,87340 Da
isoelectric point:4,35184
aromaticity:0,05970
hydropathy:0,09478

Domains

Domains [InterPro]
DC_0601
STR
1–133
DC_0601
IPR054442
ATT
11–121
IPR054442
AHH02868.1
1 134
Architecture
STR
ATT
STR
STR 1-10 | ATT 11-121 | STR 122-133 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage SPM-1
[NCBI] 		1453336 Uroviricota > Caudoviricetes > Lindbergviridae > Pbunavirus F8 >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHH02868.1 [NCBI]
Genbank nucleotide accession
KF981875.1 [NCBI]
CDS location
range 4972 -> 5376
strand +
CDS
ATGCTGGAAGACGGTACGACAAAGATGGACTCCAGAACGGTCCATCCTATGGAGATCATCGTTGAGGTATTCTGCCCTTCAATTGATGTCGTCGATCAGATTAATCAACTGCTCCTGGATCGCGATACGCTGTACAAAGTCATCACTCGCGGCATGGTATTCGAACGAATGATGTGTACCAGCGAAGCGCTCAATCAGACGCCAGAAATGATATCCGCAACTCCTGCGCGGCTGACATTTTCCCAAGTGCTCGTTCAGAATCCAAAACCTATCATGTTCAGGAATGCTGGAGACTCGTCCATAATCGACCGAGGGTTGGCCCTGGCCGAAGACGTTGTGGGCTCGGCCAGTGATCTGTTCGACTACGCAGTGAACGGCGTCCAGAACGCCGCAGACTTGTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c04d67de0b3a9592d00baa4796e74456d9224dbd5d7c7faecbf349743da85fcc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5985
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of an F8-Like Lytic Myovirus ({varphi}SPM-1) That Infects Metallo-beta-Lactamase-Producing Pseudomonas aeruginosa Neves,P.R., Cerdeira,L.T., Mitne-Neto,M., Oliveira,T.G., McCulloch,J.A., Sampaio,J.L., Mamizuka,E.M., Levy,C.E., Sato,M.I. and Lincopan,N. 2014 24699949 GenBank