Protein

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Genbank accession
YP_009851269.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYLEGTCTTGGVVTPGVKVYAFRTGQWGAPASGISDFEGKWRVEGLVDDVPYDVAFVHPDGQWEGKMSSRRMPIFDPFADPYWEDTTLLVHFDDVAGQTPTNERGIIGFRIGGIGASISDNAPTPKFGTGALNINNGATSAGFWFGTGASTGIVADTNPMYMGSTDNFTVEGWFYCRSGVATNTYRDICILAANDKGVVINGSSRLVYYDGGIKIEGPSMTDLYDKWVWLVVQRENGITGMWLDGQRIGTFGDTGVKNAFRIGSNTQASEQFFGGLDEWRHTRAARYPGSPVTIEVPTAPFTPGNPIRSDSFTVPRLWNYEKIGGTANWEITAGRLNMDQPAGTPAQTHFVRRDFTSQNLFCEAEIFQAQDSGFMWRFVDENNYYMISLMDDQSPSLPNTARIYKRVGGSFTKIGETPITLTRGSANKVRVEMTGTTITLVINGASIGTYTDSAISVAGRIGFKAESRSEYNGQLSVDNFKWDTLL
Physico‐chemical
properties
protein length:487 AA
molecular weight: 53307,92670 Da
isoelectric point:5,02527
aromaticity:0,11910
hydropathy:-0,28214

Domains

Domains [InterPro]
DC_0826
ATT
1–135
DC_0826 IPR013320 DC_0966
IPR013320
STR
135–290
IPR013320 G3DSA:2.60.120.560
G3DSA:2.60.120.200
STR
151–291
G3DSA:2.60.120.200
YP_009851269.1
1 487
Architecture
ATT
STR
RBD
ATT 1-135 | STR 136-291 | RBD 292-487
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009851269.1
1 487
Domain Start End Length (AA) Confidence
N-terminal 1 101 101 0,7913
Central domain 102 308 208 0,5665
C-terminal 309 487 178 0,9420
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-101
Central
102-308
C-terminal
309-487

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Mendera
[NCBI] 		2650877 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009851269.1 [NCBI]
Genbank nucleotide accession
NC_048804 [NCBI]
CDS location
range 122849 -> 124312
strand +
CDS
ATGGCATATCTAGAAGGTACATGCACAACTGGTGGCGTTGTCACCCCTGGCGTGAAGGTTTACGCATTCCGCACAGGACAATGGGGCGCTCCTGCATCAGGCATTAGCGACTTTGAAGGCAAGTGGCGCGTTGAAGGATTGGTTGATGACGTCCCTTATGACGTCGCTTTCGTGCATCCGGATGGACAATGGGAAGGGAAGATGTCAAGCCGACGCATGCCTATCTTTGATCCGTTTGCCGATCCATACTGGGAAGACACAACTCTACTTGTTCACTTTGATGACGTTGCCGGTCAAACCCCGACGAATGAACGCGGCATCATAGGATTCCGAATTGGAGGAATTGGGGCGTCGATCTCAGACAATGCTCCAACTCCCAAGTTTGGAACAGGAGCCTTGAACATCAATAACGGCGCCACTTCTGCCGGTTTCTGGTTTGGTACAGGTGCATCAACCGGTATCGTCGCCGACACCAATCCTATGTATATGGGTTCCACTGACAACTTCACTGTAGAGGGTTGGTTCTATTGCCGAAGTGGCGTAGCGACCAACACCTACCGAGACATCTGCATTCTCGCAGCCAATGACAAAGGCGTCGTGATCAATGGTAGCAGTCGACTTGTCTACTATGATGGCGGAATCAAGATCGAAGGCCCAAGCATGACTGATCTATATGATAAATGGGTGTGGCTTGTTGTTCAGCGTGAAAACGGTATAACGGGGATGTGGCTAGACGGTCAGAGAATCGGCACTTTTGGTGATACGGGAGTCAAAAACGCTTTCCGAATCGGATCCAACACCCAAGCGTCTGAACAATTCTTCGGCGGTTTGGATGAGTGGAGACACACGAGGGCAGCCAGATATCCGGGATCTCCTGTAACTATTGAAGTTCCGACCGCTCCATTCACACCAGGAAACCCAATCCGATCAGATAGTTTCACTGTACCTCGACTTTGGAACTACGAAAAGATTGGCGGAACAGCCAACTGGGAAATCACGGCTGGTCGCCTCAATATGGACCAGCCGGCTGGAACACCAGCCCAGACTCACTTCGTCAGGCGAGACTTCACCTCGCAGAACCTTTTCTGTGAGGCTGAGATCTTCCAAGCCCAAGACTCCGGATTTATGTGGCGTTTTGTTGATGAAAACAACTACTATATGATCTCTCTTATGGACGATCAGTCTCCTTCTCTTCCAAACACCGCTAGAATCTATAAGCGTGTTGGTGGCAGCTTCACAAAGATTGGCGAAACTCCAATCACCTTGACTCGCGGATCAGCCAACAAGGTGAGAGTGGAGATGACAGGAACGACTATCACTCTCGTGATCAATGGTGCGTCCATTGGAACCTACACAGATTCGGCAATCTCTGTTGCTGGACGTATTGGTTTCAAGGCGGAATCTCGATCTGAATACAACGGTCAGCTATCCGTTGACAACTTCAAGTGGGACACACTCCTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2da30340fcf373abd7fe14e5693d367f63a6a79e789662f714085190f23f7bd7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8403
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50