Protein

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Genbank accession
WGH49670.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MNMNDFKIPVTGVYGIKIKRKVGTDMEYIEDFGKCNNMLLDGFFVRAALGILQPSSWLFFVGTGSNPVVATQSQLTNLLEPSSNFAAATELDVEIVGSDYFMGVTGEASWDLGAIVGNISEIGVSLRSDGSSTELDSRALITPAALTVTAEDQLVVSYTLRAKIPTTQPTFNVTLDGVATTITMETRNCTALVPWRVSNTFMRSNPYNFGLIQVSSTQELDNDPTVSTDISDSGYFYGTTSSSESGNTRVVTTSMSINDMNHPTPIKYIAYSTDYYSTPLFGLHFNPPFTKDASKAFSMSISYTLVRG
Physico‐chemical
properties
protein length:308 AA
molecular weight: 33478,25780 Da
isoelectric point:4,59500
aromaticity:0,10065
hydropathy:-0,03701

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WGH49670.1
1 308
Domain Start End Length (AA) Confidence
N-terminal 1 303 303 0,2039
Central domain 304 303 1 0,0121
C-terminal 304 308 4 0,9632
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-303
Central
304-303
C-terminal
304-308

Taxonomy

  Name Taxonomy ID Lineage
Phage Alishewanella phage vB_AspM_Slicko01
[NCBI] 		3038238 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Alishewanella sp. SMS8
[NCBI] 		2994676 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Alteromonadaceae > Alishewanella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WGH49670.1 [NCBI]
Genbank nucleotide accession
OQ508956.1 [NCBI]
CDS location
range 95072 -> 95998
strand -
CDS
ATGAACATGAATGATTTTAAAATACCAGTAACTGGGGTATATGGAATAAAGATAAAAAGAAAAGTGGGAACAGATATGGAATATATCGAAGATTTTGGCAAATGTAATAACATGTTGTTAGATGGATTCTTCGTTAGAGCAGCATTAGGGATTCTACAACCGAGTAGTTGGTTGTTTTTTGTTGGTACTGGTAGTAACCCAGTTGTGGCAACACAATCTCAATTAACCAACTTACTTGAACCATCATCTAACTTTGCAGCTGCAACTGAGTTAGATGTAGAGATAGTAGGTAGTGATTATTTTATGGGTGTGACTGGTGAAGCTAGTTGGGATCTAGGAGCAATTGTAGGCAACATATCAGAAATTGGTGTGTCTTTAAGAAGTGATGGTTCTAGTACAGAACTAGACTCACGTGCCCTAATTACACCAGCTGCATTAACAGTTACTGCGGAAGATCAGTTAGTAGTTTCTTATACATTACGAGCTAAGATCCCAACAACTCAACCTACATTCAACGTAACACTAGATGGTGTTGCGACTACTATAACCATGGAAACCAGAAACTGTACTGCATTGGTTCCATGGAGAGTCAGTAACACTTTCATGAGAAGTAACCCTTATAATTTCGGGTTAATCCAAGTCAGTAGCACTCAAGAATTAGACAACGATCCTACGGTGAGTACCGACATATCTGATTCTGGTTATTTTTATGGTACAACGTCCAGCTCGGAATCTGGCAATACCAGAGTAGTAACAACGTCAATGAGTATCAACGATATGAACCATCCAACTCCTATAAAATATATCGCATACTCAACTGATTATTATTCTACACCATTATTTGGATTACACTTCAATCCTCCATTTACGAAAGATGCTTCAAAGGCATTTAGTATGTCTATATCATATACGTTAGTTAGAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
43558963ee656f23b9532138d3107895cb5113fa9b2fbff588ca1c3a2f59684d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7429
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecogenomics reveals distinctive viral-bacterial communities in the surface microlayer of a natural surface slick Rahlff,J., Wietz,M., Giebel,H.-A., Bayfield,O., Nilsson,E., Bergstrom,K., Kieft,K., Anantharaman,K., Ribas-Ribas,M., Schweitzer,H.D., Wurl,O., Hoetzinger,M., Antson,A. and Holmfeldt,K. 2023 — GenBank