Protein

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Genbank accession
CBW54802.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,54
Protein sequence
MASSLEGAYKSLLQGVSQQVPRLRLDGQVSTQENMLADPVTSLRRRPGAPLTVIHSLGTITDTNLYTQYVERGSDGRTLIINTSTGNWWVMNKDATAVLKSGQDAYFIASGGSSSLQSTSVGGETFILNIQQAPQAIASTTKRDPSTTGWYFTKVGAFDKDYTLTIQRGGTTQTFTYHTPSSTDANAVAQTSPVYITSQLVQQMQAAGIEVHQQDMYIYVVGAATLVVTSTSGTSYVGYSGRHNVALITDLPAVIPAGGDGILTSVGTDANALTWYRWEQASNSWVEDSSYGSPAALRNMPRVLAADDTITAPDFEGRLAGDDLTNEIPTFLDQGVITGMTTYQGRLVLLSGAFLTMSKSGNPYRFYRSTVTELQNSDRIDIGIGSSQNSILRRGIQFNRDLVLFGDAVQAVVSGGGNILTPSTAAISLTSEESCVSKIAPMQAGQTVLYPFKRSSGYSGMLELIPSQYTSSQYVSQDATGHIPEYFAGDVRVTAASNVVNMCVFTGSRDTSVIYVHEYQWSSDGKVQAAWHRWTMPQPVVSLHFAREKLVIFTADGGNVMLTVIDAREGYDNQTTSELPYLDLYTQVAVSGGQFVVPSQLRTPYTNGKQLGLAFATGTAATEEAGISSVNTNSWTGTVELGVPDGTYWVGIKYMSKFTPTPPILKDENGKEIGAGHVRLVRMEVAVRNTGMFNANVKDVRTDVDTTGDYTGLFMNSPELVPDYPLIISQANVIVPCRTLADTTEVTFSTNGTHDMNLLDISYLLRYNQRRRRV
Physico‐chemical
properties
protein length:774 AA
molecular weight: 83885,97110 Da
isoelectric point:5,28503
aromaticity:0,08656
hydropathy:-0,17145

Domains

Domains [InterPro]
DC_0058
STR
1–774
DC_0058
IPR058003
TTP
5–774
IPR058003
CBW54802.1
1 774
Architecture
STR
STR 1-774
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CBW54802.1
1 774
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9922
Central domain 145 343 200 0,0687
C-terminal 344 774 430 0,1785
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-343
C-terminal
344-774

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage LIMElight
[NCBI] 		881915 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Limelightvirus
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CBW54802.1 [NCBI]
Genbank nucleotide accession
FR687252 [NCBI]
CDS location
range 27092 -> 29416
strand +
CDS
ATGGCTTCCAGCTTAGAAGGTGCATACAAAAGCCTGCTTCAAGGTGTATCCCAGCAGGTGCCTCGGCTTCGTCTGGATGGTCAGGTCAGTACGCAGGAAAACATGCTCGCTGACCCTGTGACTTCACTACGCCGCCGTCCGGGTGCGCCACTCACTGTCATTCACAGCTTAGGCACAATCACCGACACGAACCTCTACACTCAGTACGTGGAGCGTGGCTCTGATGGCCGGACCCTCATCATCAACACCAGCACAGGTAATTGGTGGGTGATGAATAAGGATGCGACCGCAGTATTGAAATCCGGTCAGGATGCGTACTTCATTGCCAGCGGCGGCTCGTCCTCTCTGCAATCCACTTCGGTGGGTGGTGAGACGTTCATCCTCAATATCCAACAGGCACCACAGGCTATCGCCAGTACGACCAAACGTGACCCCAGCACCACCGGGTGGTATTTCACAAAGGTTGGTGCCTTCGACAAAGACTACACGCTCACCATTCAACGTGGTGGGACTACCCAGACTTTCACGTACCATACACCGTCATCCACTGATGCCAATGCTGTAGCCCAGACCTCACCCGTGTATATCACGAGCCAGCTGGTGCAGCAGATGCAGGCTGCGGGTATCGAGGTACACCAGCAGGACATGTACATCTACGTGGTGGGTGCTGCGACACTGGTTGTGACCAGTACGTCAGGCACCAGCTATGTGGGCTACTCAGGCCGTCACAATGTGGCTCTGATTACCGACCTACCAGCAGTTATCCCTGCGGGTGGTGATGGTATCCTGACCTCTGTGGGTACTGACGCCAACGCTCTGACGTGGTATCGTTGGGAACAGGCATCAAACTCGTGGGTGGAAGACAGCTCTTATGGCTCTCCCGCCGCGCTCCGCAATATGCCCCGTGTACTGGCCGCTGATGACACTATCACTGCGCCGGACTTCGAGGGACGTTTAGCGGGTGATGACCTGACGAACGAGATTCCCACCTTTCTGGACCAAGGCGTAATTACGGGTATGACAACCTATCAGGGCCGCTTAGTGCTCCTGTCGGGTGCCTTCCTCACTATGTCGAAGTCCGGTAACCCATACCGCTTCTACCGCTCAACCGTGACCGAGCTACAGAACTCAGACCGTATTGATATTGGTATCGGCTCCAGCCAGAACTCCATTCTGCGCCGGGGTATCCAGTTCAACCGTGACTTAGTGCTGTTCGGTGACGCTGTGCAGGCCGTGGTATCTGGTGGTGGTAACATCCTCACCCCGTCTACCGCTGCAATCTCCCTGACCAGTGAGGAATCCTGTGTCTCCAAGATTGCACCGATGCAGGCTGGCCAGACCGTGCTGTATCCGTTCAAACGTAGTTCAGGCTACTCAGGTATGCTGGAGCTGATTCCATCGCAGTACACGTCCTCTCAGTACGTCTCACAGGATGCAACGGGTCATATCCCCGAATACTTCGCAGGTGATGTTCGTGTCACCGCCGCGTCTAACGTGGTCAACATGTGCGTATTCACCGGGAGCCGTGACACCAGTGTCATCTATGTGCATGAGTACCAGTGGTCGAGTGATGGTAAGGTTCAGGCCGCATGGCACCGCTGGACGATGCCGCAACCTGTCGTGTCTCTGCACTTCGCCCGTGAGAAGCTGGTCATCTTCACAGCAGACGGCGGTAACGTCATGCTGACCGTGATTGATGCCCGTGAAGGGTATGATAACCAGACTACCTCGGAACTCCCGTATCTGGACCTGTACACTCAGGTTGCAGTATCGGGTGGTCAGTTCGTTGTTCCGTCACAGCTCCGTACACCGTACACCAACGGTAAGCAGCTGGGGCTGGCGTTTGCCACCGGGACAGCGGCTACAGAGGAGGCTGGAATCAGCAGCGTCAACACGAACTCATGGACTGGTACTGTCGAGCTGGGCGTTCCTGACGGGACGTATTGGGTTGGCATTAAGTATATGTCCAAGTTCACTCCGACCCCGCCTATCCTCAAAGATGAGAACGGGAAGGAGATTGGCGCTGGTCATGTTCGTCTGGTCCGTATGGAAGTCGCTGTCCGCAACACAGGTATGTTCAATGCCAACGTGAAGGACGTGCGCACTGACGTAGACACCACAGGCGACTACACAGGTCTATTCATGAACAGCCCAGAGCTGGTGCCGGATTATCCGCTCATCATTTCTCAGGCTAACGTGATTGTGCCGTGTCGCACGCTGGCTGACACCACCGAGGTGACGTTTAGCACGAACGGTACGCATGACATGAATCTGCTTGATATTAGCTATCTCTTACGCTACAACCAACGACGCCGGAGGGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84a36f19f04af141a38a87919161a83f38943e6a8819c73ec4b49c051e3b0828
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, Belonging to the 'phiKMV-Like Viruses' Adriaenssens,E.M., Ceyssens,P.J., Dunon,V., Ackermann,H.W., Van Vaerenbergh,J., Maes,M., De Proft,M. and Lavigne,R. 2011 21421778 GenBank