Protein

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Genbank accession
YP_010597444.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYYNGSAATFADLKTAIENACVANGWTLSNGILSKNGCFFQLVATTPQLTLQGGTGQTGSTLNGGPSSFVKVMSPTGTPIVFPVNYEIHVMTSPEDEVYCVINYNADFYQQLSFGKSLISGIGGTGAWFTGSYDSRVGQSGSGNQFDMNSGSNMDSGGTRGFWGLAGGLFFESLSGGSYSGNYFHCGLDAVNWYNTRGSNLGYPHCAAIINALPNQSNSATVLVPVKGIKTRGSGGLTIVVNPPSVRYCRIDNLEPGSLVTYGPDQWKVYPFYRKDLTQRQGSSSSIHSGTYGYAIKYTGS
Physico‐chemical
properties
protein length:302 AA
molecular weight: 32070,31780 Da
isoelectric point:7,57359
aromaticity:0,12252
hydropathy:-0,17583

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010597444.1
1 302
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,3449
Central domain 11 203 194 0,0039
C-terminal 204 302 98 0,9992
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-203
C-terminal
204-302

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeS-Yazdi-M
[NCBI] 		2746928 Uroviricota > Caudoviricetes > Jondennisvirinae > Septimatrevirus yazdi >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010597444.1 [NCBI]
Genbank nucleotide accession
NC_069742 [NCBI]
CDS location
range 36236 -> 37144
strand -
CDS
ATGGCCTACTATAACGGAAGTGCCGCGACTTTCGCGGATTTGAAAACCGCTATCGAAAACGCTTGCGTCGCTAACGGCTGGACGCTTTCTAACGGCATTCTTTCGAAGAACGGTTGTTTTTTCCAACTTGTCGCCACTACGCCACAACTTACGTTGCAAGGCGGAACCGGCCAAACTGGTTCAACCTTGAACGGCGGCCCGTCTAGCTTCGTAAAAGTCATGTCGCCAACTGGAACGCCTATCGTTTTTCCAGTTAACTACGAAATCCATGTAATGACTTCGCCAGAAGACGAAGTTTATTGCGTAATTAACTACAATGCCGATTTTTACCAGCAACTTTCATTCGGAAAGTCGTTGATTTCCGGCATTGGTGGAACTGGCGCATGGTTTACCGGAAGTTATGACAGTCGTGTAGGGCAAAGCGGAAGCGGAAACCAATTCGACATGAATTCCGGCAGTAACATGGATTCTGGCGGAACCCGTGGTTTTTGGGGACTGGCTGGCGGACTTTTCTTCGAATCGTTAAGCGGGGGTAGTTACAGCGGCAATTATTTTCATTGCGGGCTTGACGCTGTAAATTGGTATAACACAAGGGGTTCGAATTTGGGATACCCGCATTGCGCCGCAATCATTAACGCATTGCCAAATCAATCAAATTCGGCAACCGTACTTGTTCCGGTAAAAGGAATAAAAACACGCGGAAGCGGCGGCCTTACTATCGTAGTCAATCCGCCAAGCGTTCGTTATTGCCGAATCGACAACTTGGAACCCGGAAGTTTGGTCACATACGGCCCGGATCAATGGAAGGTTTATCCGTTTTATCGGAAAGACCTTACGCAACGGCAAGGATCGTCAAGTTCTATTCATAGTGGAACTTACGGATACGCTATCAAATACACCGGAAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2141ee1d455128edcf1c8ab9e476c6c53a2dc728b9b9d30b464a41dd6e660e1b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6691
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of phage genom Yazdi,M., Ghaemi,E.A., Shirzad Aski,H., Mohebbi,A., Tabarraei,A. and Sabzali,S. 2024 — GenBank