Protein

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Genbank accession
YP_007349010.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTNQLRPKYPSGIEAQERSKFDKGIDTDGILNTGLIEHAPGAEMTVPADNTAGDANIAGIRYNPDNDEFEGGYGDNSWRQLGGGGIRWEQADKNSPVHVAKAARGYLIDNRLGQSQIIFPVVTRVGTIIAIADQFGKFATLPLTIKASGGKIYGQTDDMTISTNNVAATFTWTGQEQGWIITSGVGLGQGQVYNRTIFSEVLTAPTSFINVNHATEMVDVYINGARLAEKRYNLADTGVALKEEIPAGVEVQVIEYKPIQLTISDEDSRLKELENQVQALKDGPIIWRYTATGGETVLNPGTAFTRCKLEINGIGWDIDDYSIVDNKIILPEPLGVDPISGQGDRVKVTIGFDNDVGFEGYVSKQELADEDGAKMVGTSLVSNLDDVIAGKVLQWSVGVKVTSPHQIIQYAEKSYQYIGYLPRVVAGANPMADGGVWSVANPAGVWVPVGDLGFATTIGATGGAAMVGMKNGGNLQQAIGWVTPEQFGAKGDGVTDDIAAINAAVGTGLNVIFNASSTYLIGGPIILPYTATWQNLFGNDAVIKAKSHFLMFQQKDFDGNVGMNTAYKNFYGIRGVGTAHAKSVYTQVVQSQFLRMTNGTASDCSAIGFCNGLSLMGGARVFNFYADDIRNAAIRGEGENNFLVGMNAGFIAGDVVLIKSNYSYYSNLFCEYAGVSPEDTEEPASLRDQGAMVSFAQDGQNAIGNVVDTCHCLNYGGAFAVFSGSYNKMTGSLYGGAFVEARRAKGAGNAIYMSGSYNMIADVQLDLVYSGVEMHTGSSHCSMGYITIEAKSGYGTYAISINGTTTDCHIRGLHVKRGLTKSADAYLGTDGTDIGELKLENFTQPSSGASPVRVLGSNIIDRLYVSQSPTSTSTFINVTIQGNAQIRDLQIDGCLGNSLLVTAGAVPNLGTVQITPNQSSTVPPCIFSGTDTRVVGGLNIRGGSAVGQPRANGTLWLGSYRGPTWARADSAVAGTVHYPDPVAHSL
Physico‐chemical
properties
protein length:987 AA
molecular weight: 104769,23670 Da
isoelectric point:4,99242
aromaticity:0,08612
hydropathy:-0,10000

Domains

Domains [InterPro]
DC_0041
STR
1–666
DC_0041 DC_1420
Coil
Unmapped
264–284
Coil G3DSA:2.10.10.80 IPR012334
IPR011050
STR
478–886
IPR011050
IPR024535
ENZ
487–561
IPR024535
YP_007349010.1
1 987
Architecture
STR
ATT
STR
RBD
STR 1-391 | ATT 392-460 | STR 461-895 | RBD 898-987
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007349010.1
1 987
Domain Start End Length (AA) Confidence
N-terminal 1 498 498 0,9965
Central domain 499 945 448 0,9941
C-terminal 946 987 41 0,7433
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-498
Central
499-945
C-terminal
946-987

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage phiMAM1
[NCBI] 		1262513 Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus MAM1
Host Serratia sp.
[NCBI] 		616 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Serratia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007349010.1 [NCBI]
Genbank nucleotide accession
NC_020083 [NCBI]
CDS location
range 26550 -> 29513
strand +
CDS
ATGTCCACTAACCAGCTCAGACCAAAATATCCGTCTGGCATTGAGGCTCAAGAGCGCTCGAAGTTTGACAAAGGGATCGATACTGACGGTATATTGAACACCGGGCTGATTGAACATGCTCCTGGTGCTGAGATGACCGTCCCAGCTGACAACACGGCCGGTGATGCCAACATCGCGGGCATTCGCTATAACCCAGACAACGATGAGTTCGAAGGTGGTTATGGTGATAACTCTTGGCGCCAACTCGGTGGCGGTGGCATTCGTTGGGAACAAGCTGACAAAAACTCCCCTGTGCATGTCGCCAAAGCAGCGCGTGGCTACCTGATCGATAACCGTCTGGGTCAATCACAGATCATCTTCCCGGTTGTAACCCGTGTTGGCACGATCATCGCCATCGCTGACCAGTTTGGGAAATTCGCGACTCTGCCGCTGACAATCAAGGCCAGTGGTGGAAAAATCTATGGCCAAACCGACGACATGACAATTTCCACCAACAACGTGGCTGCAACATTCACGTGGACGGGGCAGGAGCAGGGCTGGATCATCACTTCTGGTGTTGGCCTGGGCCAAGGCCAGGTTTACAACAGAACCATCTTCTCTGAGGTGCTGACGGCACCCACGTCGTTCATCAACGTGAACCACGCAACCGAAATGGTTGATGTCTACATCAACGGTGCGCGCCTGGCAGAGAAACGTTACAATCTGGCCGACACTGGCGTTGCTCTGAAAGAAGAGATCCCGGCCGGGGTAGAAGTGCAGGTCATCGAGTACAAACCTATCCAGCTGACCATCAGCGACGAAGACAGCCGACTGAAGGAACTGGAGAATCAGGTTCAGGCTCTGAAGGATGGCCCAATCATCTGGCGTTACACTGCGACTGGCGGTGAGACCGTGTTGAACCCAGGAACTGCGTTCACCCGCTGTAAGCTGGAAATCAATGGCATCGGCTGGGACATAGATGACTACTCCATCGTTGACAACAAGATCATCCTCCCAGAGCCGCTGGGTGTTGATCCTATCAGTGGTCAGGGCGACCGTGTCAAGGTCACTATTGGCTTCGATAACGATGTCGGATTCGAAGGCTATGTCTCCAAGCAAGAGCTGGCTGATGAAGACGGTGCGAAGATGGTGGGCACTTCATTGGTGTCTAACCTGGACGACGTCATCGCAGGTAAGGTCTTGCAATGGTCTGTTGGTGTCAAAGTGACCTCCCCTCACCAGATCATCCAGTACGCGGAAAAGAGCTACCAATACATCGGTTATCTTCCGCGCGTAGTGGCCGGGGCTAACCCTATGGCGGACGGTGGTGTATGGTCAGTTGCCAACCCGGCTGGTGTTTGGGTTCCTGTGGGTGACCTCGGGTTTGCGACCACCATCGGGGCAACCGGCGGCGCAGCCATGGTTGGTATGAAGAACGGTGGGAACCTCCAGCAAGCGATTGGTTGGGTTACTCCGGAGCAGTTCGGGGCTAAAGGTGACGGCGTCACTGATGATATTGCAGCCATCAACGCGGCAGTGGGAACTGGCCTTAACGTGATCTTTAACGCGTCTTCGACCTATCTGATCGGTGGCCCAATCATCCTCCCGTACACGGCAACCTGGCAGAACTTGTTCGGGAACGACGCGGTCATCAAAGCCAAGTCTCATTTCCTGATGTTCCAGCAGAAAGACTTTGACGGTAACGTCGGGATGAACACCGCGTACAAGAACTTCTACGGTATCCGTGGTGTCGGGACAGCCCATGCGAAGTCTGTCTACACCCAGGTGGTACAGTCTCAGTTCTTGCGAATGACCAACGGTACAGCCAGCGATTGTTCTGCGATCGGCTTCTGTAACGGTCTTTCTTTGATGGGCGGCGCGCGGGTGTTCAACTTTTACGCTGACGACATCCGAAATGCAGCCATCCGTGGCGAGGGGGAGAACAACTTCCTGGTGGGTATGAACGCCGGTTTCATCGCTGGTGACGTAGTCCTGATCAAGAGCAATTACTCGTACTACAGCAATCTGTTCTGTGAGTATGCCGGGGTGTCTCCAGAAGATACTGAAGAACCTGCTTCCTTGCGCGACCAGGGCGCTATGGTATCGTTCGCACAAGACGGCCAGAACGCCATCGGCAATGTGGTCGATACCTGTCACTGCCTGAACTATGGCGGCGCGTTCGCAGTGTTCTCTGGCTCCTACAACAAGATGACAGGTTCCCTGTACGGCGGTGCATTTGTTGAAGCCCGGCGCGCCAAGGGTGCTGGTAACGCCATCTACATGTCTGGATCTTACAATATGATCGCTGACGTCCAGCTTGACCTGGTGTATAGCGGTGTTGAGATGCATACTGGCTCCAGCCACTGCTCTATGGGCTACATCACTATAGAGGCCAAGAGTGGGTATGGTACATATGCGATCTCTATCAACGGCACGACAACTGACTGTCATATCCGTGGCCTTCATGTTAAACGTGGCCTAACTAAATCGGCTGATGCGTACTTGGGTACTGACGGGACCGACATCGGCGAGTTGAAGCTGGAGAACTTTACCCAACCATCCAGCGGGGCATCACCTGTGCGGGTACTGGGGAGCAATATTATTGACCGCTTGTATGTGTCTCAGTCTCCAACTTCGACTTCTACGTTTATCAACGTGACGATACAAGGCAATGCACAGATTCGTGATCTGCAAATTGATGGTTGCTTGGGCAACTCACTGTTAGTTACTGCAGGTGCTGTCCCTAATCTGGGTACAGTACAGATCACCCCGAACCAGAGTTCGACTGTTCCGCCTTGCATCTTCTCAGGAACTGACACCCGTGTTGTTGGTGGTTTGAATATCCGTGGCGGATCGGCGGTAGGACAACCCAGAGCTAATGGTACATTGTGGCTTGGCAGTTACCGGGGACCGACCTGGGCACGTGCGGATTCCGCTGTTGCAGGCACAGTGCATTATCCTGATCCTGTAGCACACAGTTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6613e2880ad0cabd488e6776432051ca7f31402e696917a1ab7a8ceb9fcd4e7c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7381
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50