Protein

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Genbank accession
UEP18758.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,72
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNAAHATGAVILYPAGTWNFTTLNAFSSGGIVGLGRTGTRLNSTDTSSANLIVFNGSAYSPIFKDFALTAPVSSNLPVKTGGACLQLNPTSGEIDYAHFDNVTIAYCPIGIDFVAAAYWSINNSEFLGYNAAGIQVANTNNTDTGDSVVQGSLFNTPGTAGVALLWKSSGGLKVIGNKLLGGNVGFGMQFNGASNTSDILLIGNSIENMTSQAISLARTSGTSNVSNIVIVGNQMGVEPACLQTDASGFINELTYTGNVCNLSSSTGYGVQLTSITDFNISGNTFKGNGGGPTGISIASSSSNGKIGKNVYATLSTTVSNSSTSTIVGLDTQTGTTTTAATGWSGYGTLFSSPTTTVTFPNAYTVAPTASNITMTPTSTNGALGYLVTAVSTTGFSYIAISSVTNVAASFSWQAGGIK
Physico‐chemical
properties
protein length:418 AA
molecular weight: 42429,56260 Da
isoelectric point:5,00913
aromaticity:0,08612
hydropathy:0,16292

Domains

Domains [InterPro]
IPR012334
STR
1–379
IPR012334
IPR011050
STR
3–288
IPR011050
IPR006626
Unmapped
94–115
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
UEP18758.1
1 418
Architecture
STR
STR 1-379 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UEP18758.1
1 418
Domain Start End Length (AA) Confidence
N-terminal 1 22 22 0,2698
Central domain 23 331 310 0,9915
C-terminal 332 418 86 0,9858
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-22
Central
23-331
C-terminal
332-418

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage vB_Sb_QDWS
[NCBI] 		2880893 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella baltica
[NCBI] 		62322 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UEP18758.1 [NCBI]
Genbank nucleotide accession
OK094664.1 [NCBI]
CDS location
range 14004 -> 15260
strand -
CDS
ATGAACGCAGCGCACGCGACCGGCGCCGTCATCCTCTATCCGGCCGGCACGTGGAATTTCACGACACTCAATGCTTTTTCTTCCGGAGGTATCGTCGGATTGGGGCGCACGGGCACTCGCCTGAACTCGACTGATACCTCGTCGGCGAATCTGATCGTTTTCAACGGCTCGGCCTATTCGCCGATTTTCAAAGACTTCGCGCTGACGGCGCCTGTCTCGTCGAACCTTCCCGTCAAAACGGGGGGCGCATGCCTTCAGCTCAATCCGACGTCGGGCGAGATCGACTACGCGCATTTCGATAATGTCACGATCGCCTATTGCCCGATCGGCATCGATTTCGTCGCGGCGGCGTACTGGTCGATCAACAATTCGGAGTTTCTGGGTTACAACGCTGCAGGCATCCAGGTTGCGAATACCAACAATACGGATACCGGCGATAGCGTTGTTCAGGGTTCGCTGTTCAACACGCCCGGCACCGCGGGCGTGGCCCTTCTCTGGAAGTCATCGGGCGGCCTGAAGGTCATCGGCAACAAATTGCTCGGCGGTAACGTCGGCTTCGGCATGCAGTTCAATGGCGCGTCGAACACGAGCGATATTCTTCTGATCGGCAACTCGATCGAGAACATGACCTCGCAAGCGATTTCGCTTGCGCGCACGTCCGGCACGTCCAACGTTTCGAACATCGTCATCGTCGGCAACCAGATGGGAGTCGAGCCGGCATGTCTGCAGACGGACGCGAGTGGTTTCATCAATGAGTTGACGTATACGGGTAACGTCTGCAATCTTTCGAGCAGCACCGGATATGGCGTTCAGCTGACGAGCATCACCGACTTCAACATTTCCGGCAATACGTTCAAGGGAAATGGCGGTGGCCCGACGGGGATCTCGATCGCATCGAGCAGCTCCAACGGCAAGATCGGCAAAAACGTCTATGCGACGCTCTCGACCACCGTTTCGAACTCCAGCACGAGCACGATCGTTGGCTTGGATACGCAAACTGGAACCACGACGACGGCCGCGACCGGCTGGAGTGGATATGGCACCCTCTTTTCGTCGCCGACCACGACCGTCACATTCCCCAACGCCTATACGGTGGCCCCAACTGCGTCCAACATTACGATGACGCCGACGAGCACGAATGGCGCGCTCGGCTATCTGGTCACCGCGGTATCGACTACGGGTTTTTCGTACATCGCGATTTCGAGTGTGACCAACGTGGCTGCATCGTTCTCGTGGCAGGCCGGCGGCATCAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6007a7dc7dac2ba0fb7422865c7f8205de2822c605a50dd37905ed1d56d4963e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8662
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome analysis of a novel Shewanella phage vB_Sb_QDWS Tan,L., Xuan,G., Lin,H. and Wang,J. 2022 35394245 GenBank