Protein

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Genbank accession
YP_004324482.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MAQWNKDAQEYRAQDTTNFEVVMLADEDGNPINTFGSASNIPISAGQLAGYSYIHKFGGNPLLNNSTEETMWDEGGLYPWATMDTAATTLTTNSESGNNGAEITIQGLNENWEPITEVLTLDGTAQTTTNSWKRVFRGFVSGSQAITADFTLSKSGDVVLRIITAHQQTEMALYTVCAGKTAYMTTIDASTLKNESITVRMMLREYGGVFRCRHVFQASTGQYNHEFTIPKGIPEKTDIDLRALASSNNISGYASFELILVDN
Physico‐chemical
properties
protein length:263 AA
molecular weight: 28844,72010 Da
isoelectric point:4,65525
aromaticity:0,09125
hydropathy:-0,31293

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage Syn1
[NCBI] 		444861 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus syn1
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324482.1 [NCBI]
Genbank nucleotide accession
NC_015288 [NCBI]
CDS location
range 107932 -> 108723
strand +
CDS
ATGGCACAGTGGAACAAGGATGCTCAAGAATATAGAGCACAGGACACAACAAACTTTGAAGTAGTGATGCTTGCCGATGAAGACGGCAACCCCATCAATACATTTGGTTCTGCTTCTAATATTCCTATTTCTGCTGGACAGTTAGCAGGATATAGTTACATTCATAAGTTTGGTGGGAATCCTCTACTGAATAACTCTACTGAAGAGACTATGTGGGATGAGGGTGGACTTTATCCTTGGGCGACTATGGATACTGCTGCTACTACACTAACCACAAATTCTGAATCTGGTAATAACGGAGCAGAGATTACCATTCAAGGATTAAATGAGAACTGGGAACCAATAACAGAAGTTCTCACTCTTGACGGCACAGCACAAACCACAACAAATTCATGGAAGCGTGTATTCCGTGGTTTTGTTTCAGGATCACAAGCAATCACTGCTGACTTCACATTATCTAAAAGTGGTGATGTAGTTCTTCGTATCATCACAGCACATCAGCAAACAGAGATGGCACTTTATACTGTTTGTGCTGGCAAAACTGCTTACATGACTACGATTGATGCTTCTACTTTAAAAAATGAAAGTATCACTGTAAGAATGATGCTTCGTGAATATGGTGGTGTGTTCAGATGCCGTCACGTTTTCCAAGCATCAACAGGTCAGTATAATCATGAGTTTACTATTCCAAAAGGAATTCCAGAGAAAACTGATATTGATTTAAGAGCTCTTGCTAGTAGTAATAATATTTCTGGGTATGCTTCTTTTGAACTTATTCTTGTAGATAACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1470e55193ea349666b00fb0036a1a0b837fb6fe8436ef5c7815236901078db9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6788
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank