Protein

View in Explore
Genbank accession
AGG54526.1 [GenBank]
Protein name
C1q domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,55
Protein sequence
MSTIKTTNITHGSNSGTANVVLDSSGNATINGNTTINGNTTVGGRLGITTQPSFYAALHGSSTTITVAANGEIPYNYTKWNIGSHYDTSTGRFTAPVAGIYMFGCQMGDEYSSNAAGWASTIWAFAKNNSRYYDFVEGINVSNVNAHYEHGGTVIMQMSANDYASVKQIGGGDKTLYRTADGEATRHRFWGVLLH
Physico‐chemical
properties
protein length:195 AA
molecular weight: 20842,64410 Da
isoelectric point:6,63740
aromaticity:0,10769
hydropathy:-0,31744

Domains

Domains [InterPro]
IPR008983
RBD
43–195
IPR008983
IPR001073
RBD
47–195
IPR001073
IPR008983
RBD
51–194
IPR008983
IPR001073
RBD
68–113
IPR001073
AGG54526.1
1 195
Architecture
RBD
RBD 43-195
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage SS120-1
[NCBI] 		616674 Uroviricota > Caudoviricetes > Autographivirales > Banchanvirus SS1201 >
Host Prochlorococcus marinus subsp. marinus str. CCMP1375
[NCBI] 		167539 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54526.1 [NCBI]
Genbank nucleotide accession
HQ316584 [NCBI]
CDS location
range 14076 -> 14663
strand -
CDS
ATGAGTACGATTAAAACGACGAATATTACCCACGGTAGTAATTCAGGTACAGCTAACGTTGTATTAGATAGCTCAGGCAACGCAACTATCAATGGCAATACAACTATCAATGGCAATACAACAGTAGGAGGAAGGCTTGGTATAACAACACAACCTTCTTTTTATGCAGCTCTCCATGGTTCTTCAACAACTATTACAGTCGCAGCAAATGGAGAGATCCCATATAACTACACAAAATGGAACATAGGTAGTCATTACGATACTTCCACTGGACGTTTCACGGCTCCAGTAGCAGGTATTTATATGTTTGGCTGTCAAATGGGTGATGAATATAGCAGTAATGCAGCTGGCTGGGCTTCAACAATATGGGCTTTTGCTAAGAATAATAGTAGATACTATGACTTTGTTGAAGGCATAAATGTCAGTAATGTTAATGCGCATTATGAACATGGGGGTACGGTAATTATGCAGATGTCTGCTAATGATTATGCTTCTGTAAAACAAATTGGTGGAGGTGATAAAACACTATATAGAACCGCAGATGGTGAAGCTACAAGACACAGATTCTGGGGAGTATTACTACACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6907f40a54d2bad8cb9f624c11ab0c15f9133f3fa5bb1a65994397046f4e4f57
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8213
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-SSP9 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank