Protein

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Genbank accession
YAA51046.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAMDLTRQEIKNPVGILIDPKPSDLPINAWSEGRNIRFKNGKVSKAQGYNRIFPDLPEGQSQSFALPYLYNSTPYWFVGTAKRIYRTEGRTWQNVSRRASGGGEGDPYQSSDNFPWNGGFLSGVAVLNNGAETPQAFLPNADHFVDMPNWPATLRAKIVRPFKNYLIALNITKNSVDMPTVVKWSSPADPGNVPFTWNEADPKNDAGENPLADTAGAIVDGKKLRDSFIIYKEDSVYSMRYIGGVYVFQFQQLYDDVGMLAPNCAAEFDGKHFVIGQGDVYVHNGVQKKSVIDGKMKNYLFNAIKSGGVRSVFVVPDYANSEMWVCFQSTSDAITEGYADSAAIWNWEEDTWTLRDIPKVVAGTFGVVDPQEPDDWDLDPAQWNSDSTVWGSATYNPAKNKLVFVSQANRLTYVVGESTQFDGVDFKSRIERTDLYNGMDQLVKHITTVAPHLSGTGSCDVYVGKSMIMDSPVEWFGPYKYEIGKDFKIDCRVSGRFIGFRFEFESAGSWELSGYTVESTNPVGKR
Physico‐chemical
properties
protein length:526 AA
molecular weight: 58701,05040 Da
isoelectric point:5,15901
aromaticity:0,12738
hydropathy:-0,41350

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA51046.1
1 526
Domain Start End Length (AA) Confidence
N-terminal 1 386 386 0,7097
Central domain 387 515 130 0,1305
C-terminal 516 526 10 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-386
Central
387-515
C-terminal
516-526

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VpR
[NCBI] 		3447163 Viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA51046.1 [NCBI]
Genbank nucleotide accession
PV847830 [NCBI]
CDS location
range 14871 -> 16451
strand +
CDS
ATGGCTATGGACCTCACTCGTCAAGAGATTAAAAACCCCGTCGGTATTCTGATTGACCCTAAACCGTCTGACTTGCCGATCAATGCTTGGAGCGAGGGTCGTAACATTCGGTTTAAGAATGGCAAGGTGTCGAAAGCTCAAGGGTACAACCGTATCTTCCCGGACTTACCAGAAGGTCAGAGCCAGAGCTTCGCCTTGCCATACCTATACAACTCCACACCTTATTGGTTCGTGGGGACTGCTAAGAGGATCTACCGGACCGAAGGCCGTACATGGCAGAACGTCTCCCGTAGAGCCTCTGGTGGTGGCGAGGGTGACCCTTACCAGTCCTCGGATAACTTCCCTTGGAACGGTGGGTTCCTCTCTGGTGTGGCAGTATTGAATAACGGTGCGGAGACGCCTCAGGCTTTCCTACCTAACGCTGACCACTTTGTGGATATGCCTAACTGGCCAGCCACCCTCCGTGCTAAGATTGTACGTCCCTTTAAGAACTACCTGATCGCACTGAACATTACTAAGAACTCTGTGGACATGCCTACAGTAGTCAAGTGGTCCAGCCCTGCTGATCCCGGCAACGTACCCTTCACGTGGAACGAGGCTGACCCTAAGAACGACGCTGGTGAGAACCCATTGGCGGATACCGCTGGTGCAATCGTGGATGGCAAGAAGTTGCGAGACTCCTTCATCATCTACAAAGAAGACTCGGTATACTCCATGCGTTACATCGGTGGCGTGTACGTCTTCCAATTCCAGCAACTGTATGATGACGTTGGTATGTTGGCCCCTAACTGCGCTGCTGAGTTCGATGGTAAGCACTTCGTTATTGGTCAGGGCGACGTCTACGTTCACAACGGTGTACAGAAGAAGTCTGTGATTGACGGCAAGATGAAGAACTACCTCTTTAACGCTATCAAGTCTGGTGGTGTACGTTCGGTGTTCGTAGTCCCTGATTACGCCAATAGTGAGATGTGGGTATGCTTCCAGTCGACCTCTGATGCAATCACCGAAGGTTATGCCGATAGTGCTGCCATCTGGAACTGGGAAGAAGACACTTGGACCCTCCGTGACATCCCCAAGGTTGTCGCTGGTACGTTCGGTGTAGTTGACCCACAAGAGCCTGATGACTGGGATTTGGACCCGGCTCAGTGGAACTCGGACTCTACCGTGTGGGGTTCTGCTACATACAACCCAGCTAAGAACAAACTTGTGTTCGTCTCTCAGGCCAACCGGTTGACTTACGTTGTGGGGGAGAGTACCCAGTTCGATGGTGTTGACTTCAAGAGTCGTATCGAAAGGACTGACTTGTATAACGGCATGGATCAGCTGGTCAAACACATCACCACTGTAGCCCCTCACCTCTCTGGTACAGGCTCCTGCGACGTCTACGTTGGCAAGTCCATGATTATGGATAGCCCAGTGGAGTGGTTCGGACCATACAAGTACGAGATCGGTAAGGACTTTAAGATCGACTGTCGAGTCTCTGGACGCTTCATTGGTTTCCGCTTTGAGTTTGAGTCTGCGGGGTCGTGGGAGCTTTCGGGATACACCGTCGAATCCACCAATCCAGTAGGTAAACGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
304ec017ecc6fcc5bfd1e23adecc0872b472e9e44f77812e705bc0d06bffddcc
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8762
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50