Protein

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Genbank accession
WBY53687.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MLASTTDKASEKDGDGVAWNAKTGLYQVVNKTAEASFLVSHMYVGVGPSTPSAQLRFEYKNGGMWYRTSRDAYGFEVNWSKVYTEAQKPTPSEIGAYTKAETDQKIATAISDSTDLNKIYPVGIVTWFNSNVNPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLSVGNLPSHTHSFSATTSSFDYGTKGTNTTGGHTHSGSGSTSTNGGHTHYIEAWNGTGRGGDNMSSYAVSYRSGGSYTNAAGDHSHTFSFGTSGAGDHSHSVGIGAHSHTVSGNTGGTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:314 AA
molecular weight: 32855,18830 Da
isoelectric point:6,89391
aromaticity:0,10191
hydropathy:-0,46688

Domains

Domains [InterPro]
DC_0905
STR
3–314
DC_0905
IPR022246
RBD
13–114
IPR022246 IPR053827 IPR005003 IPR005003
WBY53687.1
1 314
Architecture
STR
ATT
STR
STR 3-116 | ATT 117-246 | STR 247-314
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBY53687.1
1 314
Domain Start End Length (AA) Confidence
N-terminal 1 83 83 0,4545
Central domain 84 282 200 0,0273
C-terminal 283 314 31 0,9919
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-83
Central
84-282
C-terminal
283-314

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage REP7
[NCBI] 		3022460 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBY53687.1 [NCBI]
Genbank nucleotide accession
OQ174506.1 [NCBI]
CDS location
range 87965 -> 88909
strand -
CDS
ATGCTTGCAAGTACCACTGATAAAGCTTCTGAGAAGGATGGTGATGGTGTTGCATGGAATGCAAAAACAGGTCTGTATCAGGTTGTTAACAAAACTGCTGAGGCTTCTTTCCTTGTGTCTCACATGTATGTGGGGGTTGGTCCTTCCACACCATCTGCACAATTAAGATTTGAGTACAAAAATGGTGGGATGTGGTATAGGACATCAAGAGATGCCTATGGCTTCGAAGTTAACTGGTCTAAAGTTTACACGGAAGCACAAAAACCAACCCCTTCAGAGATTGGTGCATACACTAAAGCTGAAACTGACCAGAAAATTGCAACAGCAATTAGTGACTCTACAGACCTTAATAAAATCTATCCAGTAGGTATTGTAACGTGGTTTAACAGTAACGTTAACCCTAATACAGCACTTCCTGGGTTAACTTGGACGTACCTGAATAATGGTGTTGGTAGAACTATTAGAATTGCAGCAGCAAATGGTTCAGATGTTGCTACAACTGGTGGTTCAGATTCTGTGACGCTATCTGTTGGTAACTTACCATCACACACTCACAGTTTCTCTGCTACCACTTCATCTTTTGATTATGGTACGAAGGGAACTAATACTACTGGTGGCCACACACACTCTGGTAGTGGTTCTACTAGCACAAATGGTGGGCACACTCACTACATTGAGGCGTGGAATGGTACTGGTAGAGGTGGTGATAATATGTCATCATATGCCGTATCATACAGGTCGGGTGGGAGTTATACTAATGCAGCAGGGGACCACAGTCATACTTTCTCTTTTGGTACTAGTGGTGCTGGTGACCATTCCCACTCTGTAGGTATTGGTGCTCACAGCCACACAGTTAGTGGTAACACTGGTGGTACAGGTTCTGGTTCAGCATTTAGTGTTACTAACCAGTTCTACAAGCTAATGGCTTGGGTAAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca32da538ff8ab2bb102548e5d9fd1e47787b5dbabcad5cc91d4395453468a3f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7814
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Swapped genetic code blocks viral infections and gene transfer Nyerges,A., Vinke,S., Flynn,R., Owen,S.V., Rand,E.A., Budnik,B., Keen,E., Narasimhan,K., Marchand,J.A., Baas-Thomas,M., Liu,M., Chen,K., Chiappino-Pepe,A., Hu,F., Baym,M. and Church,G.M. 2022 — GenBank