Protein

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UniProt accession
A0A0K1Y5U2 [UniProt]
Protein name
Pectate lyase superfamily protein domain-containing protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPLYTYGGNGAAVLTDAAGNVIPDYPVTVRVAGTGQPVTALYEADGTTPIGELRSNSADSDSPGAIRTFRAADITAIEYEYNGLSGPVRWFESGREVPTEALEAARGALSRAAGGTVAGPLTAAGGLTVKNGFTVDGDGHVDALAVDTLTVNGKPVTGDGGSLPGMYAPQAYGAKGDGVADDAPAVQAALDAAYNAGGGWVLVPPGTYRCATLPLRIRRGTRLTLMQGAVFRRGAPNTFLLNGDATQQFGGYTGHGDLVVEGGVWDMRATANPADPDMCISIGHARNVTIRDLEIRDVGGYHAIELNSTKNGRVIGCSFRGYLDTGGRDFSEAVQIDGAFRVSVFGGFGPYDGTPCEDVVMRDCYVGPSGTAGTVAWPAGVGSHSAAWGVWHRRIKVANNTFEGGAQYAVKPYIWDDSIISGNTVVNMGAGVWARTLDSSKAADRRDMGGVDRASSQAGSGLVVEGNTFRNIGAFNDAIFVEGEASGKWRHVTITGNTVATVGGSENGIRAVHTERFTATANTFTDIGGTALSTENCADGVLSGNHITTCGGSFFTSNGGARLTVADNNASDCKSHGFWAWSNTDLKLTGNYLRGAGRGDSTAQGIRLSTSGDRITITNNTYRKWGSGTEAASVYTCTAAPTNIRRWGNDWLGQGTVTSTAANETLSPYDAGTP
Physico‐chemical
properties
protein length:674 AA
molecular weight: 69945,38030 Da
isoelectric point:5,32413
aromaticity:0,08160
hydropathy:-0,21365

Domains

Domains [InterPro]
DC_1436
ATT
1–205
DC_1436 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR012334
STR
165–515
IPR012334
IPR011050
STR
170–529
IPR011050
IPR012334
STR
170–515
IPR012334
IPR024535
ENZ
172–221
IPR024535 IPR011050
IPR039448
ENZ
478–624
IPR039448
A0A0K1Y5U2
1 674
Architecture
ATT
STR
ATT 1-205 | STR 206-656 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A0K1Y5U2
1 674
Domain Start End Length (AA) Confidence
N-terminal 1 127 127 0,9933
Central domain 128 663 537 0,9623
C-terminal 664 674 10 0,4357
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-127
Central
128-663
C-terminal
664-674

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage SF1
[NCBI] 		1690817 Uroviricota > Caudoviricetes > Sfunavirus >
Host Streptomyces flavovirens
[NCBI] 		52258 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Kitasatosporales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKY02190.1 [NCBI]
Genbank nucleotide accession
KT221033 [NCBI]
CDS location
range 34953 -> 36977
strand +
CDS
ATGCCGCTCTACACCTACGGCGGGAACGGCGCCGCCGTGCTCACCGACGCCGCCGGAAACGTCATCCCCGACTACCCCGTGACCGTCCGGGTCGCCGGGACCGGGCAGCCGGTTACGGCCCTGTATGAGGCTGACGGGACGACGCCTATCGGCGAGCTGCGCAGCAACTCGGCCGACAGCGACTCGCCCGGCGCGATCCGTACGTTCCGGGCCGCAGATATCACCGCGATCGAATACGAGTACAACGGGCTGTCGGGGCCGGTCCGCTGGTTCGAGTCGGGCCGCGAGGTGCCGACCGAGGCCCTCGAAGCGGCGCGGGGCGCGCTCTCGCGCGCCGCGGGCGGCACGGTCGCCGGCCCGCTCACCGCCGCGGGCGGGCTCACCGTGAAGAACGGGTTCACCGTCGACGGCGACGGCCATGTCGACGCGCTCGCGGTCGACACGCTCACCGTGAACGGCAAGCCGGTCACGGGTGATGGCGGCTCGCTACCGGGCATGTACGCGCCGCAGGCGTACGGCGCCAAGGGGGACGGCGTCGCCGACGACGCGCCCGCCGTGCAGGCGGCGCTCGACGCCGCGTACAACGCGGGCGGCGGGTGGGTCCTGGTCCCGCCGGGCACCTACCGGTGCGCCACGCTGCCGCTGCGCATCCGGCGCGGTACACGGCTCACCCTCATGCAGGGCGCGGTGTTCCGCCGCGGAGCCCCGAACACGTTCCTGCTCAACGGCGACGCGACGCAGCAGTTCGGCGGATACACCGGGCATGGCGACCTCGTCGTCGAGGGCGGTGTGTGGGATATGCGCGCCACCGCCAACCCGGCCGACCCCGACATGTGCATCAGCATCGGGCACGCCAGGAACGTCACGATCCGCGATCTTGAGATCCGGGACGTGGGCGGGTACCACGCGATCGAGTTGAACAGCACGAAGAACGGGCGCGTGATCGGCTGCTCGTTCCGCGGCTACCTCGACACCGGCGGCCGCGACTTCTCCGAAGCGGTGCAGATCGACGGGGCCTTTCGCGTGTCCGTGTTCGGCGGGTTCGGCCCGTACGACGGCACCCCGTGCGAGGACGTCGTCATGCGCGACTGCTACGTCGGCCCCTCGGGCACCGCGGGCACCGTCGCGTGGCCGGCCGGGGTCGGCTCGCACTCGGCGGCGTGGGGCGTGTGGCACCGCCGCATCAAGGTCGCGAACAACACCTTCGAGGGCGGCGCGCAGTACGCGGTGAAGCCGTACATCTGGGATGACTCGATCATCTCCGGCAACACCGTCGTGAACATGGGCGCCGGGGTCTGGGCCCGCACCCTCGACAGCTCGAAGGCCGCGGACCGCCGGGACATGGGCGGCGTCGACCGCGCCTCGTCACAGGCCGGTTCGGGCCTCGTGGTCGAAGGCAACACGTTCCGGAACATCGGCGCGTTCAACGACGCGATCTTTGTCGAGGGCGAAGCGTCCGGGAAGTGGCGGCACGTCACGATCACCGGCAACACCGTCGCCACCGTGGGCGGTTCGGAGAACGGCATTCGCGCCGTGCACACCGAGCGGTTCACCGCGACCGCGAACACGTTCACGGACATCGGCGGAACGGCGCTGTCGACCGAGAACTGCGCGGACGGCGTGCTGTCCGGCAACCACATCACCACCTGCGGCGGCTCGTTCTTCACGAGCAACGGCGGCGCCCGGCTCACCGTCGCCGACAACAACGCGAGCGACTGCAAGTCGCATGGGTTCTGGGCCTGGTCGAACACCGATCTCAAGCTGACCGGCAACTACCTGCGGGGCGCCGGACGCGGCGACAGCACCGCGCAGGGCATCCGGCTCTCGACCAGTGGCGATCGGATCACGATCACGAACAACACCTACCGCAAGTGGGGCAGCGGCACCGAGGCCGCCTCGGTCTACACGTGCACGGCCGCCCCGACCAACATCCGCCGATGGGGTAACGACTGGCTCGGTCAAGGCACCGTCACCTCGACGGCCGCGAACGAAACCCTCTCACCGTACGACGCCGGCACCCCGTAG

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
f2beeebcfed9569b165447afe510d7318594f42b75ab40b3bd95fd9d5e2552b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7799
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50