Protein

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Genbank accession
BEQ12899.1 [GenBank]
Protein name
putative putative tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAAVDGATKSLMQGVSQQVPRERLDGQVSLQVNMLSDVVQGMRRRPGYRKRAEGIFAGGQWSPSQVFATSVDVGDESMHVLINTLSGTLAIYDDSWVQRSVSAHPYLLAADASKIHTATLRGYMYICNTAQVPTKTVSNAGKLNPDSAGFFFVRTGQYSKDYAVTLTLGGVANTVEYTTPDGTTAGDAAKATPEFISQTLLNSLAALSIPGMSYTAAGAYVLVRTTQPGALSLTSDSGTTSISTSNLSHVALVSDLPARMPQGGDGMVISVGASDKNSVYYQYSFSTNRWVESGAWNSASTLANMPMRILLDTALTVENPAYEGRLAGDDLTNEDPVFLTDGITGMGVFQGRLVLLSGPSVTMSAAGKPLRWYRSSVSELLVVDTISVYSGAATGTDFTHAVQFNKDLLLFSKTCQAVVPSGNSIVAPSTAQIVITSSYSSTAKTAPIVAGRSLMYFAPRSESFAAVLELVPSTTTDSQYTTNDVSAHIPQYMPGVVRQAAASTTSNSVAVLCDGDARTVFVQNYLWSDDKKVQSAWHSWTTPYDVACVWFVRDTLYFGLVVSGNLTVVSAEPQAGATVGGYRRPFSDLYAAITVQNQMFTVPDALRPALQAGVDMLLTYATGEVAGEWLGVQEWSPITWRARTVRNVPDGTYMLGLRYRSALSPTPPLMRDKDGIVIGTGKSTLIRYELSVQNAGEFHAAVQRGDTVLSDGVLDSVTYSSEELVPNTPIVGETGRVIIPVRANSQDTITTLYTDADHDMGVLTIEWVLQYHARRRRA
Physico‐chemical
properties
protein length:778 AA
molecular weight: 83486,08420 Da
isoelectric point:5,48567
aromaticity:0,08355
hydropathy:-0,02571

Domains

Domains [InterPro]
IPR058003
TTP
1–777
IPR058003
DC_0058
STR
1–778
DC_0058
BEQ12899.1
1 778
Architecture
STR
STR 1-778
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BEQ12899.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9910
Central domain 142 340 200 0,1380
C-terminal 341 778 437 0,2354
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-340
C-terminal
341-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ep4
[NCBI] 		3057492 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Actinidiaevirus
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BEQ12899.1 [NCBI]
Genbank nucleotide accession
LC776701 [NCBI]
CDS location
range 27826 -> 30162
strand +
CDS
ATGGCAGCCGTAGATGGTGCAACTAAATCCCTGATGCAGGGTGTGTCCCAACAAGTCCCCCGTGAGCGGCTTGATGGTCAGGTATCCCTGCAAGTAAACATGCTATCCGATGTGGTCCAAGGTATGCGTAGGCGGCCCGGTTATAGAAAACGAGCTGAGGGTATATTCGCAGGTGGCCAGTGGTCCCCCTCACAAGTGTTTGCAACATCTGTCGATGTTGGCGATGAGAGCATGCACGTGCTGATCAACACTTTAAGTGGCACACTGGCTATTTATGACGACAGCTGGGTGCAGCGCTCAGTAAGCGCGCATCCGTACCTGCTGGCTGCTGACGCTTCCAAGATACACACAGCCACTTTGCGCGGGTACATGTATATCTGTAACACTGCACAGGTGCCGACCAAGACGGTCAGTAATGCCGGTAAACTGAACCCAGATTCTGCGGGCTTCTTCTTTGTTCGTACAGGACAGTACAGCAAAGATTACGCGGTTACGCTAACCCTTGGAGGAGTGGCTAACACGGTCGAGTACACGACCCCAGATGGGACCACTGCCGGAGATGCAGCAAAAGCTACTCCTGAGTTTATATCGCAGACCCTGCTGAACTCCCTGGCCGCTTTGAGTATACCGGGTATGAGCTACACAGCTGCTGGCGCGTACGTGCTGGTAAGGACCACACAACCCGGTGCCCTGTCGCTTACCTCTGACTCCGGTACCACCAGCATCAGTACATCCAACCTATCGCATGTGGCACTCGTTAGCGACCTGCCTGCCCGTATGCCCCAAGGTGGCGACGGTATGGTTATTAGCGTCGGTGCCTCAGATAAGAACTCTGTTTACTATCAGTACAGCTTTTCCACAAACCGCTGGGTAGAATCCGGGGCATGGAACTCCGCATCTACTCTGGCTAACATGCCTATGCGTATACTGCTGGACACTGCTCTTACCGTGGAGAACCCTGCGTACGAGGGGCGGCTTGCTGGGGATGATCTGACAAACGAGGACCCCGTGTTCCTTACCGACGGCATTACTGGTATGGGCGTGTTCCAAGGTAGGCTGGTACTGCTAAGCGGCCCTTCCGTTACTATGAGTGCTGCCGGTAAACCCCTTCGGTGGTACCGCTCCTCTGTGTCTGAGCTTCTAGTTGTAGACACGATCAGTGTGTACTCGGGCGCTGCAACAGGTACTGACTTTACACACGCCGTCCAGTTCAATAAGGACCTGCTGTTGTTTAGTAAGACGTGCCAAGCTGTAGTGCCTTCCGGCAACTCCATTGTAGCCCCTAGTACAGCCCAGATCGTTATCACATCCAGCTACTCCAGTACTGCTAAAACGGCACCCATAGTCGCAGGCCGTTCGCTCATGTACTTTGCTCCGCGCTCGGAAAGCTTTGCCGCCGTTCTGGAGCTAGTGCCCAGCACGACGACAGACTCGCAGTACACCACAAACGATGTCTCTGCACACATCCCGCAGTACATGCCGGGTGTTGTGCGCCAGGCAGCAGCGTCCACCACAAGCAACAGTGTGGCTGTGCTTTGCGACGGGGATGCTCGTACCGTGTTTGTGCAGAACTACCTATGGTCGGATGATAAGAAGGTGCAGTCCGCATGGCACTCCTGGACCACGCCGTATGATGTGGCCTGCGTGTGGTTTGTACGTGACACATTGTATTTTGGGCTGGTTGTAAGCGGTAACTTGACAGTGGTATCAGCGGAGCCCCAGGCAGGGGCTACCGTGGGCGGGTACCGGAGACCCTTCTCCGACCTGTATGCAGCCATCACTGTGCAGAATCAGATGTTCACTGTGCCGGATGCACTACGCCCAGCGTTGCAAGCAGGCGTAGATATGCTGCTTACGTACGCAACTGGCGAGGTGGCTGGCGAATGGTTAGGCGTACAGGAGTGGAGCCCCATAACATGGCGCGCCAGGACTGTACGCAATGTGCCGGATGGTACGTACATGCTGGGCCTGCGCTACCGCAGCGCGCTTTCGCCTACACCCCCACTAATGCGGGACAAGGACGGTATTGTAATAGGTACAGGCAAGTCTACCCTGATCCGGTACGAACTGAGTGTGCAGAATGCTGGGGAGTTTCATGCGGCGGTTCAGCGAGGCGACACCGTGCTGTCCGACGGTGTGTTAGATAGCGTGACTTACAGCTCAGAGGAGTTAGTACCGAACACCCCTATAGTGGGAGAGACTGGGCGGGTAATCATTCCAGTACGTGCGAACTCGCAAGACACAATCACTACCCTGTACACTGACGCAGATCATGACATGGGTGTTCTTACAATTGAGTGGGTGCTCCAATACCACGCTCGCAGAAGGAGGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4cd7436fc53a0f900097c4d7a0691279d777000f31f2e0a9fa2488cd602e9d0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pseudomonas phage Ep4 Aono,M., Yagi,H. and Kobayashi,K. 2024 38112474 GenBank