Protein

View in Explore
Genbank accession
YP_010037978.1 [GenBank]
Protein name
pectin lyase activity
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTNLTPNPGWDDVPQLETTTKAQGGVGGPMNAQAQALVNRTEALNPDNQQTPSALDGSESWVSRKSGAWVKTPLAAIASWIIGFYRGFTLNWAGALARPVSNKLNDVVSVSDFGAIGDGSSHPLSGVASLFGMSTSGWTLAQWQTIYPHAQALTDELDWCALQAAVNSATGPFIFRCGIQKQYITNRTIVSGANDILIDLQRSRITNTAGVDCWNHGTTSSPANGVAEIVGGGLETSDYTKKCFYTYMNHGISGGGALKNSLTMRDFRGRGRVHGVNVARGIVLDNAWTSTPVGYVDMDAFTFDVSKYADSTNASSFSYFLRNVQTSGYRFALAFNLLGSPASYPSFGAYMEGVILLGCRAYNGRGLLNVTNQANTGSTNNYQSPLWQVIACDTQGWGEPILLSGLMNVRLHDNYFVIDQGSVPSGITPPSTLNAIGFSMCSEVKARGNVFNVLPNVASQVNLVASDANCDDIIFERTRIYAGAAGIVGFNIAATSSATKYRIMERGTLVLSGSCSVFGTNPQYWSSEYNARASGATMDEGGVKFLQGTFAGTTDGSGVLNLAFPANLFASAPNSMLVSNGDTGAYSGFVGYKRSTLTASGVSLQGAANTAIRFDYIVKGA
Physico‐chemical
properties
protein length:621 AA
molecular weight: 65821,88590 Da
isoelectric point:6,32308
aromaticity:0,09984
hydropathy:-0,05346

Domains

Domains [InterPro]
DC_2184
STR
62–618
DC_2184
IPR012334
STR
82–559
IPR012334
YP_010037978.1
1 621
Architecture
STR
STR 62-618 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010037978.1
1 621
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9930
Central domain 156 523 369 0,9887
C-terminal 524 621 97 0,9766
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-523
C-terminal
524-621

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage Mica
[NCBI] 		2767579 Uroviricota > Caudoviricetes > Micavirus >
Host Burkholderia cenocepacia
[NCBI] 		95486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010037978.1 [NCBI]
Genbank nucleotide accession
NC_054148 [NCBI]
CDS location
range 11067 -> 12932
strand +
CDS
ATGACGAACCTTACCCCGAATCCTGGTTGGGATGATGTGCCGCAGCTGGAAACGACGACGAAGGCGCAAGGCGGCGTCGGCGGCCCGATGAATGCTCAGGCGCAGGCGCTGGTGAACCGCACCGAGGCGCTGAACCCCGACAACCAACAGACGCCCAGCGCACTGGATGGCAGCGAGTCGTGGGTATCTAGGAAGTCGGGCGCATGGGTAAAGACGCCCCTCGCTGCGATTGCGTCCTGGATTATTGGGTTCTATCGCGGATTTACGCTCAACTGGGCTGGCGCGCTTGCGCGGCCAGTTTCGAACAAGCTGAATGACGTGGTTAGCGTCAGTGACTTTGGCGCAATCGGCGACGGCAGTTCGCACCCGCTTTCTGGTGTGGCAAGCTTGTTTGGTATGTCAACGTCCGGCTGGACGCTCGCGCAATGGCAGACCATCTACCCGCATGCGCAGGCGCTGACAGACGAACTGGATTGGTGCGCGCTGCAGGCCGCAGTGAATTCCGCTACTGGTCCGTTCATTTTTCGCTGCGGCATTCAGAAGCAATACATTACGAACCGCACCATCGTTAGCGGCGCGAATGATATCCTGATTGACCTGCAGCGCTCGCGCATTACGAATACTGCGGGCGTGGATTGCTGGAACCACGGCACCACCAGTTCGCCAGCCAATGGCGTTGCCGAAATCGTCGGCGGCGGCCTGGAAACGAGCGACTACACGAAAAAATGCTTCTACACATACATGAACCACGGAATTTCCGGCGGCGGCGCGTTGAAAAACTCGCTGACGATGCGTGATTTTCGTGGGCGCGGGCGCGTGCATGGCGTCAACGTGGCGCGCGGCATCGTCCTGGATAACGCATGGACCAGCACGCCTGTCGGCTATGTGGACATGGATGCGTTCACGTTCGACGTTTCGAAATACGCGGATTCCACTAACGCGTCGTCATTCTCGTATTTCCTGCGCAACGTTCAGACGAGCGGGTATCGTTTCGCCCTGGCGTTCAATTTGCTTGGCTCGCCTGCGTCATATCCGTCATTCGGCGCGTACATGGAAGGCGTCATCCTGCTGGGCTGTCGTGCATATAACGGCCGAGGGCTTCTGAACGTTACCAATCAGGCGAACACTGGGAGCACGAACAATTATCAGTCCCCGCTGTGGCAGGTGATTGCGTGCGATACTCAGGGATGGGGCGAACCCATTTTGCTGTCTGGCCTGATGAACGTTCGGCTGCATGACAACTATTTCGTGATTGACCAGGGGTCCGTGCCATCCGGAATTACGCCGCCCAGCACGCTGAACGCTATCGGCTTTTCGATGTGCAGCGAAGTTAAAGCGCGGGGGAATGTGTTCAACGTTCTGCCCAATGTCGCAAGCCAGGTTAATCTGGTGGCGTCCGATGCAAATTGCGACGATATCATTTTTGAGCGAACGCGTATTTATGCAGGTGCGGCGGGAATCGTCGGCTTCAATATTGCAGCCACTTCGTCGGCGACGAAGTACCGCATCATGGAGCGCGGCACCTTGGTGCTGTCGGGTAGCTGTTCTGTTTTCGGGACTAACCCGCAATATTGGTCATCGGAATATAATGCACGTGCATCCGGCGCGACGATGGACGAAGGTGGCGTGAAGTTCCTGCAGGGAACGTTCGCCGGCACGACGGATGGAAGTGGCGTTCTCAATTTGGCATTCCCCGCCAACCTGTTCGCGAGCGCTCCCAACAGCATGCTGGTGAGCAATGGCGATACCGGGGCCTATAGCGGCTTTGTTGGCTACAAGCGTTCCACGCTTACCGCTTCCGGGGTTTCGCTTCAGGGGGCTGCCAACACTGCTATCCGCTTCGATTACATTGTGAAGGGGGCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
90344d628b5caeaec50b6779307259f109fedaa3dbc03151bdd54142a4c598d3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7735
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Burkholderia cenocepacia myophage Mica Garcia,J.A., Yao,G.W., Guadalupe Vizoso-Pinto,M., Gonzalez,C., Liu,M.L. and Gill,J. 2021-02-11 — GenBank