Protein

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Genbank accession
UJH95816.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MEVQGSYGRQLQGVSQQPIAVRLPGQVTSQLNAVPNVVDGLKTRMGSKHLARILDSLDPNSLIHHYKRGDDAEEYFVILRPGQVPVIFTVNGLPCGVNTQGSAATYLNSSSLPRETTQLMTIGDYTFVLNRTMPVRARGDMTPGLDNKGLVYVAYANFSFTYQILINGQVAAQHKTASSEDVKNEDLVRTDYVAGKLIEDWNTKKQNFPGFSMYQDGNVIVVDNNSGAAYSLTTIDGADGQDLVAIRHKVSNLDTLPNRAPAGYKVQVWPTGSKPESRYWLQAEPQDGSKVTWVETIAPGVRLGWDGATMPHVLVRESLNPDGSANFTYRPGEWEDRDVGDDLTNDFPSLLNVASPQPISSMLMVQNRLMLTSGEAVVASRTSRFFDFFRYTVLATVDTDPFDVFADIEEVYNIRWSAQMDGDVILFTSDQQFTLPGDKPLTPTSAVIRPVTAFKMTPGVRPVPSGDSILFAFDQGSYSGIREFFTDSYSDTKKAQPATSHVDKYIRGKVLELSASSSFNRAFIITNNDRSVLYVYDWLYEGTEKVQNAWHKWSFPAGTVLHTVSYSNEKLYLVMSRNNTSGGVAGVYIEVMDMGDELEYGLQDRVRMDRRAISNMHYNATNRTWTSDPLKWLPTDLSSLDAVLLTGWPSYVGGAFQFSYNPATNTISTNFDLAEGGTVQVVVGETYWYEVEPTPPLIKDSKDRVSYLDTPTVGNIYLNLDMYPDFSVVVTDKETLKERVVYLSNKIAGSLTNVIGYISPHEGTLRVPIRRKSTDISFKVRSKSPSTFQLRDIEWTGSYNPRKRRV
Physico‐chemical
properties
protein length:806 AA
molecular weight: 89874,91690 Da
isoelectric point:5,48976
aromaticity:0,10298
hydropathy:-0,33697

Domains

Domains [InterPro]
DC_0058
STR
1–806
DC_0058
IPR058003
TTP
3–806
IPR058003
UJH95816.1
1 806
Architecture
STR
STR 1-806
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UJH95816.1
1 806
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9951
Central domain 144 361 219 0,0880
C-terminal 362 806 444 0,1207
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-361
C-terminal
362-806

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage Nifs112
[NCBI] 		2894289 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UJH95816.1 [NCBI]
Genbank nucleotide accession
OK570184 [NCBI]
CDS location
range 27906 -> 30326
strand +
CDS
ATGGAAGTACAAGGCTCATACGGGCGTCAGCTACAGGGAGTCTCGCAACAACCCATCGCGGTACGGTTGCCAGGGCAGGTCACGTCACAACTTAACGCAGTGCCGAATGTGGTTGATGGCCTTAAAACTCGTATGGGTTCTAAGCACCTGGCCCGTATCCTCGACAGCCTCGACCCAAACTCCCTTATTCATCATTACAAGCGCGGTGACGATGCGGAAGAGTATTTTGTCATCCTCAGACCTGGACAGGTTCCCGTTATCTTCACGGTCAACGGATTGCCTTGTGGTGTTAATACCCAGGGATCAGCAGCAACCTACCTGAACTCGTCAAGTCTCCCGCGTGAGACAACCCAGTTAATGACCATTGGTGACTACACCTTTGTGCTTAACCGGACCATGCCTGTGCGTGCGCGTGGTGATATGACACCTGGTCTGGATAACAAAGGCCTGGTATATGTTGCCTATGCAAACTTCAGCTTCACCTATCAAATTCTTATCAATGGACAGGTGGCTGCACAGCATAAGACTGCCTCTTCTGAGGATGTTAAAAATGAAGACCTGGTAAGGACTGATTATGTTGCTGGTAAGCTGATTGAAGATTGGAACACTAAGAAGCAAAACTTCCCTGGGTTCTCCATGTATCAGGATGGTAACGTTATTGTAGTTGATAACAATAGCGGTGCGGCATACTCACTAACTACCATCGACGGTGCAGACGGGCAGGACTTAGTAGCAATCCGCCACAAGGTATCTAACCTAGACACCTTACCGAACAGAGCACCTGCTGGGTACAAAGTTCAGGTATGGCCTACCGGGAGTAAGCCAGAGTCACGCTATTGGTTGCAAGCTGAACCACAGGACGGCTCTAAGGTGACGTGGGTTGAGACTATCGCACCTGGTGTACGCCTGGGATGGGACGGGGCTACAATGCCTCATGTCCTTGTGCGTGAAAGTCTTAACCCTGATGGCTCTGCTAACTTCACATACAGGCCAGGTGAGTGGGAAGACCGTGATGTAGGCGATGACCTGACTAACGATTTCCCCTCCCTGCTTAATGTGGCCTCCCCTCAGCCTATTTCTTCTATGCTGATGGTACAGAACCGACTGATGCTTACATCGGGTGAGGCAGTGGTGGCAAGCCGTACCTCTCGCTTCTTTGACTTCTTCCGTTACACAGTGCTGGCTACGGTAGACACGGACCCATTTGATGTGTTCGCAGATATCGAGGAAGTGTATAACATCCGTTGGTCAGCCCAGATGGATGGTGACGTTATCCTGTTCACATCGGACCAACAGTTTACGCTGCCGGGTGACAAGCCACTGACTCCAACATCCGCAGTAATCCGTCCGGTAACAGCATTCAAAATGACGCCAGGTGTAAGGCCTGTTCCTTCCGGTGACTCCATCCTGTTTGCATTTGACCAGGGTTCCTACAGTGGCATCCGTGAGTTCTTCACAGACAGCTACTCGGACACTAAGAAGGCACAGCCAGCAACCAGCCATGTTGATAAATACATCCGTGGCAAGGTGTTAGAGTTGTCTGCTAGCTCCAGCTTTAACAGGGCTTTCATCATTACCAACAATGACCGCAGTGTCCTGTACGTTTATGATTGGCTCTATGAAGGGACGGAGAAGGTGCAGAATGCATGGCACAAATGGTCATTCCCAGCAGGTACGGTATTGCACACGGTGAGCTATTCAAATGAAAAACTCTACCTTGTAATGTCCCGCAACAATACCAGCGGTGGTGTGGCTGGAGTGTACATTGAGGTGATGGATATGGGCGATGAGTTAGAGTACGGATTGCAGGACCGTGTACGCATGGACCGCAGGGCTATCTCTAACATGCACTACAATGCAACTAATCGCACGTGGACCTCAGACCCTCTTAAGTGGTTGCCAACAGACCTCAGTTCTCTGGATGCTGTCCTGCTTACTGGCTGGCCTAGCTATGTTGGCGGGGCTTTCCAGTTCTCCTATAACCCAGCAACAAACACTATCTCAACCAATTTCGATTTGGCTGAAGGTGGAACAGTGCAGGTAGTTGTGGGAGAGACTTACTGGTATGAGGTTGAACCTACGCCACCACTGATCAAAGATAGCAAAGACCGTGTATCCTATCTCGACACACCAACCGTGGGTAACATCTACCTAAACCTTGATATGTATCCTGACTTCTCAGTTGTAGTGACTGATAAGGAGACATTGAAAGAGCGGGTGGTTTACCTGTCGAATAAGATTGCAGGCTCTTTAACAAACGTCATCGGATACATCTCACCGCATGAGGGTACATTACGTGTGCCTATTCGTCGTAAGAGTACCGATATTAGTTTCAAGGTCCGGTCCAAATCCCCGTCTACTTTCCAGTTGCGGGACATTGAATGGACAGGTTCCTACAACCCACGTAAAAGGAGGGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d1b47d47cd8dab02e7d3af98b9cb3ebd88144d78e2035533d9cb4a836a37d512
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3029
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage Nifs112 Dislers,A., Zrelovs,N. and Kazaks,A. 2012-10-15 — GenBank