Protein

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Genbank accession
AFI55453.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MNNHILRPVYTGVAVADIEYGSNVLHVKPLESNPSATGEIDTSLELLKVEVETPKGTVESKAIFTDYLTCSWLNRNTNRITAPDVRKGERIQIWQNADSEDFYWETIGIDNHLRTQEHVIFAFSNTNNEDRANKKLDFTNCYIFEFDTVNKKIRIKTNKNDGEPFEYEIVLNTKDGFHKMSDDVGNYTLMDSLNTVIEFMNKDKTQYRMDKKDILEKCDGNRTVIVGGDNTVEITGHDKLTVKKSSTREITDNEFTKAKGIGMEVAESIVSKTGSSFDVDSPVSNFTGAVNASSLAIAPGVSVGAPPRGEGGGYTATVDGTMFVSTSLTTPELNSDILTVGEITGDKAAFSVECTAPNI
Physico‐chemical
properties
protein length:359 AA
molecular weight: 39556,66000 Da
isoelectric point:4,85038
aromaticity:0,07521
hydropathy:-0,43343

Domains

Domains [InterPro]
DC_1459
STR
1–319
DC_1459
SSF69349
STR
213–288
SSF69349
AFI55453.1
1 359
Architecture
STR
STR 1-319 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFI55453.1
1 359
Domain Start End Length (AA) Confidence
N-terminal 1 262 262 0,0857
Central domain 263 348 87 0,3786
C-terminal 349 359 10 0,9727
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-262
Central
263-348
C-terminal
349-359

Taxonomy

  Name Taxonomy ID Lineage
Phage Halocynthia phage JM-2012
[NCBI] 		1173297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halocynthia roretzi
[NCBI] 		7729 Eukaryota > Metazoa > Chordata > Tunicata > Ascidiacea > Stolidobranchia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFI55453.1 [NCBI]
Genbank nucleotide accession
JQ340088 [NCBI]
CDS location
range 161929 -> 163008
strand -
CDS
ATGAATAATCATATTTTAAGACCGGTATATACTGGGGTTGCGGTAGCAGATATAGAGTACGGTTCTAATGTATTACACGTTAAACCATTAGAGTCTAATCCAAGTGCCACGGGTGAAATTGACACATCCTTAGAATTACTAAAAGTGGAAGTGGAAACACCTAAGGGTACAGTGGAGAGTAAAGCTATATTTACAGATTACCTTACCTGTAGTTGGCTGAATAGAAATACTAATCGAATTACAGCACCTGATGTACGAAAAGGCGAAAGAATTCAGATATGGCAAAATGCGGATAGTGAGGACTTTTATTGGGAAACTATCGGTATAGATAATCATCTAAGAACTCAAGAACATGTTATCTTTGCATTTAGTAATACTAACAACGAAGATAGAGCTAATAAGAAATTAGACTTTACAAATTGTTATATATTTGAATTTGATACCGTTAATAAGAAGATACGTATAAAGACTAATAAGAATGACGGTGAACCATTTGAATATGAAATAGTATTAAATACTAAAGATGGTTTCCATAAGATGAGTGATGATGTAGGTAACTATACATTGATGGATAGTCTTAATACTGTTATTGAATTTATGAATAAAGATAAAACTCAATACCGTATGGATAAGAAGGATATACTTGAAAAGTGTGATGGTAATAGAACTGTTATTGTAGGCGGAGATAATACCGTTGAGATTACAGGTCATGATAAGTTAACTGTTAAGAAATCTAGTACTAGAGAAATAACAGATAATGAATTTACCAAGGCCAAAGGTATAGGTATGGAAGTGGCTGAAAGTATAGTTTCTAAAACTGGTAGTAGTTTTGACGTCGATAGTCCAGTAAGTAACTTCACAGGAGCAGTTAATGCTAGTAGTTTAGCAATTGCTCCTGGAGTCTCAGTTGGTGCTCCTCCAAGAGGAGAAGGTGGCGGTTATACAGCTACAGTAGATGGGACTATGTTCGTTAGTACATCATTAACTACACCAGAATTAAATTCTGATATATTAACTGTCGGTGAGATAACTGGTGATAAAGCAGCATTTAGTGTAGAGTGTACAGCGCCAAATATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b33d4d41f733f66d93c5cda3d831f4f56f76bee4861accb3649dcef68c7faae6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6889
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage from diseased seasquirt, Halocynthia roretzi, showing soft tunic syndrome Mun,J.Y., Jang,H.N., Ha,M.A., Nho,S.W., Cha,I.S., Park,S.B., del Castillo,C.S., Jung,C.Y., Kim,Y.K., Kim,Y.R., Aoki,T.T. and Jung,T.S. 1982-05 — GenBank