Protein

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Genbank accession
XDJ00742.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,92
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQMLNFFEDQPRAGAELALTSAFAIGDSLAHGTYTYNGSLGHEESIARQGTGGTLLQSSGFQIYRPGGVSAGEAIARAWALIGFPSGVSVPPLDAANTDYWDPNWQAPIGSAGRGHDHFYVCNSNIRGFVGKKGEIPSNVNINYQSPSFPTKVYVCRGSTTNMAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPINYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPSNVVSTYVGDDLNPSYPAAGDYYQPLATVWLGLPNTNSTIILTTEVIMGNINTAGQRVSTYRGQAWRVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTAYSYTQEWASRPDSMIFRRNGYIYTIKNLGNGNVELGVVIHAAEPAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64385,08690 Da
isoelectric point:7,17197
aromaticity:0,11973
hydropathy:-0,23305

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
XDJ00742.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDJ00742.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5745
Central domain 11 233 224 0,9380
C-terminal 234 593 359 0,8336
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-233
C-terminal
234-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PMBT26
[NCBI] 		3229745 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDJ00742.1 [NCBI]
Genbank nucleotide accession
PP926508 [NCBI]
CDS location
range 110230 -> 112011
strand +
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCTGCTCTAGGTGATGCAGGTAATGGGTATTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATACTAACTGCTATTGAGATAAACGGTACTCATAGAGGATTCCTCAATGGTACTCAATCTCAGGTTGGCCAGATGCTAAACTTTTTTGAAGATCAACCACGTGCTGGCGCTGAGTTAGCTCTAACTTCTGCTTTTGCAATCGGTGATAGTCTAGCTCATGGTACTTATACGTATAATGGTAGTCTTGGTCATGAGGAATCTATTGCTCGGCAAGGAACTGGAGGTACTTTACTACAGTCTTCCGGTTTCCAGATCTATAGACCTGGTGGTGTTTCTGCTGGTGAAGCCATTGCCAGAGCCTGGGCTCTTATTGGGTTTCCTTCAGGAGTTTCAGTACCTCCACTAGATGCAGCAAATACAGATTATTGGGATCCTAACTGGCAGGCGCCTATTGGATCTGCTGGCAGAGGGCATGATCATTTTTATGTATGTAACTCTAATATACGTGGATTTGTAGGTAAAAAAGGGGAGATACCTTCTAATGTAAACATTAACTACCAATCCCCTTCCTTTCCTACTAAAGTATATGTTTGTAGGGGTTCTACGACTAATATGGCTGCGCAAGCCACTAGAAAGGTATATGTACAGGACTGGTATAACGTTACTCCTACTAAGGTTATTTGGTATGTGCTAAATCTGCGCTATTCTAATGGTAATATGGGAGTTTCTGGTAATCCATTTACTGGTTCTGATATCCTTATTTCTCCCTCTAATTTTACTATTAAAGGGGTTAGTTTACCAAATACAGGATATAAATTCATTAACCAGAATGCCTTTGGAAACTTAGGCTATCGCCCTGATATGGAGTATGTTGGTAATAATGCTGCATATACTGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATAGGCTCCAGTAATGGTGGATTGTGGTCACCCATTAACTATGGAGGTGCAGCTTCCCAAATTAGCCTTTATAAATTTGGTGTAGGTAAACAATGGTATGTAGATACTAATACTAACTCCATTGGTAATGAACATGGACCTGTATGGAGTCCTAGTACAGTACCTTTAAGGTTATTCCCTAGCAATGTTGTCAGTACTTATGTTGGGGATGACCTCAATCCATCTTATCCTGCAGCAGGTGATTACTACCAGCCTTTAGCAACAGTCTGGTTAGGACTGCCTAACACCAACTCTACTATCATATTAACTACCGAAGTTATTATGGGCAACATTAACACTGCGGGACAACGTGTTAGTACATACAGGGGGCAGGCCTGGCGTGTACAAGGTAGACGCCAACAGAGTTACACTGCGGGGGATGGTATATTTCACCAAATCCTTACCCTACCACCTGGCTATCTAGTACCATATCATAGTACTACAGCATATAGTTATACACAGGAATGGGCGAGCCGACCAGATAGTATGATTTTTAGAAGGAATGGTTATATTTATACTATTAAAAACCTTGGTAATGGTAATGTTGAGTTGGGTGTTGTCATTCATGCTGCAGAACCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7ddbf4c4967901231426372aae8157a099b71fac98ed03404919bc25045c700e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2495
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
This phage originates from the Bacteriophage catalogue of the Bacteriophage Competence Centre, Department of Microbiology und Biotechnology, Max Rubner-Institut, Kiel, Germany Sprotte,S., Brinks,E. and Hille,F. 2020-12-18 — GenBank