Protein

View in Explore
Genbank accession
QXV73672.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,66
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MAYSRVTIPGDGVTTQITASFALGYINQSDVKIHVTGEVDGGGNIVYRTYSKISDTIYQVNGDPCPVDEFYVVERVVTKTELIVDWEDDEPITDVNLNLMQKQTIMIAQEAFDYGITALRTEDGSEGPTIEKGEDGQMVIWQGGNIKAGPNAQDIADAQLNAAAAAASAVAAANSASASSASATQSETYMNRSHDWASAPEDTPVLPGEFSAFHWARKAATYLASSFATAITSSAAKTDLVDADEFGIADSAAGFGMKKSTASTLAGYVAGKLGFDFFYGFIPAYVNATTISFSAGRGWMGGKYHETLVIAQDTITNFLDTGAIAANSTYFLYAIRQNNTGAVGFRISLSTTESGVVVPGGWTCHRGSRVGIILTNASSQVRNFHQVLNDCRLPSSAWYNTGSDVNALSLPPQSPVGISVDLHVTIDTTMATSGGDIVNIVASGYNSIFGSVAYQDVRCRSRTGTDTQSQAVSSGWARTNTSGQLWLYVDTSVGAGLSSAIGNTDGWRDYTCRRIGA
Physico‐chemical
properties
protein length:517 AA
molecular weight: 54740,92670 Da
isoelectric point:4,70231
aromaticity:0,09284
hydropathy:-0,09014

Domains

Domains [InterPro]
DC_0044
STR
1–515
DC_0044
IPR005604
ATT
3–124
IPR005604
QXV73672.1
1 517
Architecture
ATT
STR
ATT 1-124 | STR 125-515 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXV73672.1
1 517
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,9938
Central domain 213 411 200 0,0216
C-terminal 412 517 105 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-411
C-terminal
412-517

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I40
[NCBI] 		2836138 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXV73672.1 [NCBI]
Genbank nucleotide accession
MW980062.1 [NCBI]
CDS location
range 36077 -> 37630
strand +
CDS
ATGGCTTATTCCCGAGTAACTATACCGGGTGATGGCGTTACAACCCAGATCACAGCGTCTTTTGCGCTGGGCTATATTAACCAGTCTGATGTGAAAATTCATGTAACTGGTGAGGTAGACGGGGGCGGTAACATCGTCTATCGGACTTACTCCAAGATTTCAGACACGATCTACCAAGTGAACGGTGATCCGTGTCCTGTAGACGAATTTTATGTAGTAGAGCGTGTTGTCACCAAGACCGAGCTTATCGTGGATTGGGAAGACGACGAGCCTATTACAGACGTAAACCTTAATCTTATGCAGAAGCAGACCATTATGATCGCGCAGGAAGCATTCGATTACGGTATTACAGCACTACGAACTGAAGACGGTTCAGAAGGCCCTACTATTGAGAAGGGTGAAGACGGACAGATGGTTATCTGGCAGGGCGGTAATATTAAGGCTGGTCCTAATGCTCAGGATATTGCTGATGCACAGCTTAACGCTGCCGCTGCCGCTGCATCCGCTGTAGCTGCTGCTAACTCTGCAAGTGCATCATCTGCAAGTGCTACACAGTCCGAAACCTATATGAATAGGAGCCATGACTGGGCCAGCGCACCAGAGGATACTCCGGTACTACCGGGCGAGTTCTCTGCATTCCATTGGGCTAGGAAGGCTGCTACGTACCTTGCATCTAGCTTTGCTACTGCTATTACAAGTTCTGCTGCTAAGACTGATCTAGTTGATGCAGATGAGTTTGGTATTGCAGATAGTGCCGCTGGTTTTGGTATGAAGAAGAGCACCGCTAGTACACTAGCTGGTTACGTAGCTGGTAAGCTAGGCTTCGACTTCTTCTACGGCTTTATACCTGCTTATGTGAATGCCACTACTATCAGCTTTAGTGCTGGTAGAGGCTGGATGGGCGGAAAGTACCACGAGACGTTAGTCATTGCGCAGGATACTATAACCAATTTTCTAGATACTGGAGCTATCGCTGCTAATAGTACATACTTCTTGTATGCGATTAGGCAGAATAACACAGGTGCGGTTGGTTTCCGTATATCATTATCTACTACGGAAAGTGGAGTTGTAGTGCCCGGTGGATGGACTTGTCACAGGGGCTCTCGTGTAGGCATTATCCTAACGAATGCATCTAGTCAAGTACGTAACTTCCATCAAGTACTAAATGATTGCAGGCTTCCCTCGAGTGCATGGTATAATACAGGCTCCGACGTTAATGCGCTTAGTTTGCCACCGCAATCACCTGTAGGTATTTCTGTAGATCTGCATGTTACAATTGATACTACGATGGCTACATCCGGTGGAGATATCGTTAATATTGTAGCATCTGGCTATAATAGTATATTTGGTAGTGTAGCTTACCAAGATGTTAGATGTAGGTCAAGAACTGGTACTGATACGCAGTCACAGGCCGTGTCTTCTGGATGGGCTAGAACTAATACATCCGGACAACTATGGCTATATGTGGATACATCCGTGGGTGCAGGTTTATCGTCGGCTATAGGTAACACAGACGGCTGGAGAGATTATACATGTAGGAGAATTGGAGCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0de3f64101ac8b527f12f2ab02fd9d4ac03d599acee3f7e41d10a3e460a1916d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8067
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity of Double-Stranded DNA Phages in the Symbiotic Bacterium Rhizobium Santamaria,R.I., Bustos,P., Cauwenberghe,J.V. and Gonzalez,V. 2011 — GenBank