Protein

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Genbank accession
QBX32310.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYVLVRSRYRPSRRGGRWQEADFTNELVTTLAAKYGDIYLYIQYPGQGEPVTRALHWVNVTNWLNDVEPTVTVQEWLTSLGNKALPFDAELPNEKIRLVKYAQAWHCGYNFTPVARGGHPLDQGSDFHKEDLLMVHPKHQPAKIRDYSMISVNGYFHLCDYTSAGVRIIDGNTTLRKCNDNQIGVYSFETIGKLTFVPIVDSMISGLNPTAPLWDGAYLTMPENVDIDNKTVLLVTGGYLNVLSSVYNRVGERTWRVQFGNMMFLDRYLESYHAMDLSSLGLTFDKENPTLFNVDELKNNDVIRKYLTLSQSFFVIVDSQSFFQEYEAVEYLNLPGRYFDNKYDRAPLVGAYGRMLDYHTIKEPHHEGIVPQHENMYVYCAVLNRRNSYDANTRAWPKQEVVDGGRYPAHPFRDETAYYRILGVEG
Physico‐chemical
properties
protein length:426 AA
molecular weight: 49061,80570 Da
isoelectric point:5,91821
aromaticity:0,12911
hydropathy:-0,40915

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX32310.1
1 426
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,8374
Central domain 27 225 200 0,4989
C-terminal 226 426 200 0,6955
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-225
C-terminal
226-426

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PA1C
[NCBI] 		2562177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX32310.1 [NCBI]
Genbank nucleotide accession
MK599315 [NCBI]
CDS location
range 130998 -> 132278
strand -
CDS
ATGTACGTGCTTGTACGTTCTAGGTATCGCCCTAGTCGCCGAGGTGGTCGGTGGCAGGAAGCGGACTTTACAAATGAGCTAGTAACTACACTAGCTGCGAAGTATGGGGATATTTATCTCTACATCCAATATCCTGGCCAAGGTGAGCCTGTAACAAGAGCACTGCACTGGGTTAATGTTACTAACTGGCTAAACGATGTTGAACCAACTGTTACTGTTCAAGAGTGGTTAACCTCTTTAGGTAATAAAGCTCTCCCCTTTGATGCAGAACTACCAAATGAAAAAATCCGTTTGGTAAAATATGCTCAGGCATGGCACTGTGGTTATAACTTTACCCCTGTTGCTCGCGGTGGCCACCCACTTGATCAAGGAAGCGACTTCCATAAAGAAGACCTTCTTATGGTTCACCCAAAACACCAACCTGCAAAGATCAGAGATTATTCAATGATCTCGGTTAACGGTTATTTCCATCTATGTGATTATACCAGTGCTGGTGTAAGGATTATCGATGGGAACACGACGTTACGTAAATGTAACGATAACCAAATTGGTGTCTACAGTTTTGAAACTATTGGTAAGCTTACCTTTGTTCCTATTGTCGATAGCATGATTAGTGGACTTAATCCCACTGCTCCTCTTTGGGATGGTGCTTATCTAACAATGCCTGAAAACGTAGATATCGATAACAAAACAGTATTGCTTGTTACCGGCGGTTATCTTAATGTTCTATCTAGTGTTTATAATCGCGTAGGTGAAAGGACATGGAGAGTACAGTTTGGTAACATGATGTTCTTGGATCGTTATCTTGAATCGTACCACGCAATGGATCTCTCTTCCCTAGGATTAACCTTCGATAAAGAGAACCCAACTCTATTCAATGTAGATGAACTCAAAAATAACGATGTTATTAGAAAATATCTAACATTGAGTCAGAGCTTCTTTGTGATTGTTGATTCACAATCGTTCTTTCAGGAATACGAAGCTGTAGAATATCTCAATCTACCTGGTCGTTACTTTGATAACAAATACGACAGGGCTCCACTCGTTGGAGCGTACGGTAGAATGTTGGATTACCACACCATCAAAGAACCTCATCATGAAGGTATTGTTCCTCAACATGAAAACATGTACGTCTACTGTGCTGTATTAAATCGTCGGAATTCGTACGATGCTAATACCCGTGCATGGCCTAAGCAAGAGGTAGTGGATGGAGGGCGTTACCCAGCTCATCCATTTAGAGACGAGACTGCATATTACCGAATTTTAGGTGTTGAAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db061d530e0b923fa8f8d8257e685bc8669302c1605ccfec0142a19433f41df8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2937
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy of healthcare-associated infections Kiseleva,I.A., Aleshkin,A.A., Rubalskii,E.O., Zulkarneev,E.R., Bochkareva,S.S. and Efimova,O.G. 2017 — GenBank