Protein

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Genbank accession
YP_008318347.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MRILDNEKFEMLNPLSPMRFQSQLGKETKRMYQEGKNIVRLSLARVLKVNYKYNTVEVITTLHKNNLSKNPNDNGKFSARLPVAFGGTTPDGKVYGSNTLVTVGSLVLIGFMEGSKDYPIVINIYGDTNNQSLLTRTSFTSGDATDEDMQRELWQLFTLFPSMTYKNIDGNGNQEVTFSGKSFMYITDTDQENAYVQDAGFDYADLPSSRYANGELIEPKSPDSPTLLYVHQGIYQKHRVTFFIKSDGTVRLGSRHLDGQGITYMEMTTDGGFQVYQKKDTTNPEEESEKFSRFGVTEDGSVILQSQKHIFEVNNEGIYVDGKSLATFGGGGTDGDGNTITFEDILNDLEDLQTSITVMNGKIETKISKTQYDIDMDGVRRYAEELVDGVETEINDINKTLDNLDEYIDGSFKDGIIDTAEAAAIQAYINTLNTEKADIDAKYTEIYNNEFMSDSEKVKLQNAKGSYDSKHTALIDTINGAIVDGKITQEDREAVDQAFDAYHSAVSTLSAAFESAADVISLNKAKKALEDAKGYTDGEIRTVNSTITQLADSITSKVDSTTFTNVVKDLDSKIATTEDNLKKDINDVDTRIDDVEKKVVYRAEIISTNGMIFRKGTTNTTLFCRVYHGDQEVTNTIDASRFKWTRVSDDADGDTAWNNAHSAGTKSVAITPSDVQVRATFNCTILDENLQ
Physico‐chemical
properties
protein length:691 AA
molecular weight: 76781,12330 Da
isoelectric point:4,66133
aromaticity:0,08394
hydropathy:-0,53068

Domains

Domains [InterPro]
DC_0209
STR
18–690
DC_0209
Coil
Unmapped
578–598
Coil
YP_008318347.1
1 691
Architecture
STR
STR 18-690 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008318347.1
1 691
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,6959
Central domain 146 619 475 0,2844
C-terminal 620 691 71 0,1206
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-619
C-terminal
620-691

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage phiNIT1
[NCBI] 		207656 Uroviricota > Caudoviricetes > Herelleviridae > Nitunavirus > Nitunavirus NIT1
Host Bacillus subtilis subsp. natto
[NCBI] 		86029 Bacteria > Firmicutes > Bacilli > Bacillales > Bacillaceae > Bacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008318347.1 [NCBI]
Genbank nucleotide accession
NC_021856.1 [NCBI]
CDS location
range 56201 -> 58276
strand +
CDS
GTGAGAATATTGGATAATGAAAAATTTGAGATGCTGAATCCGCTCTCCCCTATGCGATTCCAATCTCAGCTAGGTAAAGAGACTAAGCGGATGTACCAAGAGGGGAAGAATATTGTCCGTCTTTCCCTTGCCCGGGTATTAAAAGTTAACTACAAGTACAATACAGTCGAAGTTATTACGACTTTACATAAGAACAACCTGTCAAAGAATCCAAACGACAACGGTAAATTCTCAGCACGACTGCCTGTAGCTTTCGGAGGGACTACACCGGACGGTAAGGTTTACGGTTCCAATACATTAGTCACTGTAGGCTCTCTTGTACTTATCGGGTTCATGGAGGGGTCAAAGGACTACCCAATCGTTATTAACATCTATGGAGATACCAATAACCAATCCCTTCTCACCCGGACTTCATTCACTAGCGGCGATGCTACGGACGAAGACATGCAGCGGGAACTATGGCAGCTATTTACCTTGTTCCCTTCTATGACATATAAGAATATTGACGGTAACGGAAACCAAGAAGTAACCTTCTCAGGAAAGTCATTTATGTATATCACAGACACGGATCAAGAGAATGCCTACGTTCAGGATGCCGGGTTTGATTACGCAGACCTCCCGAGCTCTAGGTACGCTAATGGCGAGCTTATCGAACCTAAGTCCCCGGACTCCCCGACATTACTATATGTGCATCAGGGTATTTATCAAAAGCATAGGGTAACGTTCTTTATCAAGTCAGATGGAACGGTAAGACTGGGCAGCCGACATCTGGACGGTCAAGGGATCACTTATATGGAGATGACAACCGATGGAGGATTCCAAGTATACCAGAAGAAGGACACCACAAACCCGGAAGAAGAGTCTGAAAAGTTTTCTAGATTCGGTGTTACTGAAGACGGTAGTGTAATTCTCCAGTCACAGAAGCATATCTTCGAAGTCAATAACGAGGGTATTTATGTAGATGGTAAGTCTCTTGCAACATTCGGAGGCGGAGGTACAGACGGAGATGGAAACACCATCACGTTTGAAGACATCCTGAATGACCTTGAGGACCTACAGACCTCTATAACGGTTATGAATGGTAAAATAGAAACAAAGATAAGCAAAACCCAGTATGACATTGATATGGACGGTGTACGGCGGTATGCGGAAGAGTTAGTAGATGGTGTGGAGACAGAAATCAACGACATCAACAAGACTCTTGACAATCTTGATGAGTATATAGACGGCTCTTTTAAAGACGGTATCATCGACACTGCTGAGGCAGCCGCTATTCAGGCGTATATCAACACGTTGAATACCGAAAAGGCAGACATTGACGCAAAGTACACAGAAATCTATAACAACGAATTTATGAGTGACTCGGAGAAAGTTAAACTCCAAAATGCAAAAGGCAGTTACGATAGTAAACATACTGCATTAATTGATACGATTAATGGAGCTATTGTGGACGGGAAAATTACTCAAGAGGACAGAGAAGCAGTAGATCAGGCATTTGATGCGTACCACAGCGCTGTTTCCACCCTCTCTGCGGCTTTTGAATCGGCAGCCGATGTTATCTCCCTAAACAAAGCTAAAAAGGCTCTAGAGGACGCCAAAGGATATACTGACGGAGAGATTAGAACAGTTAACTCCACCATTACTCAACTAGCGGACTCCATTACATCAAAAGTAGACTCGACAACGTTTACGAATGTTGTTAAGGATTTAGACTCGAAAATTGCGACTACAGAAGATAATCTGAAAAAGGATATAAACGATGTAGACACTCGCATTGACGATGTCGAGAAGAAAGTGGTCTATCGAGCTGAGATCATTAGTACGAACGGTATGATATTTAGAAAGGGAACGACAAACACCACTCTCTTCTGTAGAGTATATCACGGAGATCAGGAAGTGACAAATACAATTGATGCCAGCAGATTTAAGTGGACCCGGGTATCGGACGATGCAGACGGAGACACTGCGTGGAACAACGCCCATTCTGCCGGAACAAAGTCAGTTGCAATCACTCCTTCAGATGTACAGGTGCGAGCTACTTTTAACTGTACGATTTTAGACGAGAATTTACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d7d5d080a7fe29f4000e75cf313249c82a9086bf6674293a9f3e7965e3dec939
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6820
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
phiNIT1 genome sequensing Ozaki,T. and Kaneko,J. 2011-11 — GenBank