Protein

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Genbank accession
YP_004324409.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MPYQFSASPLYVEEGQSIQFRYEAPPLFNDITQVKIEIGELTVFWIIETKLEDFEPDPFFLRNVDDAEPDTLLTYAATTDPDNGVAYTGLASDPDPLREGEEVITITGLDPGTQAPLIVSSNVIDVNNWSYRLRLYNEGSSSYGAWGAWTRALNNTVSNLDQIQVRLVSSSSPSDTKNVVVTVGTGSATWDVTTGAIPVNTPNPAPDFGSLNNLPLGQLVYSDIAQILGLTTSAIISVDNGAEIAVSNFNTTFTNADGYEVLNNISNGWGNNLTVSNGQYVQLRGTSSATPTATINFSVTVGDGAGISVWQITSGQGIDDNPTNFVFQDLVGQIPGQTGLRSETASGSSTSVAGRNVALVGGLDAGLFVPVTVRPADTNIVPKISINGGSSGLINNVTVQNGDTIELVVDNSTDITNPVIPGQGVVTVGINVGNRFIQTWTVANWTGPDTIPAFTPINQVINRTPGGASIIGPIGLTDFNLPITISATNPESFNEFNFATNENIGDVLFSINGDSATVGPRTVNPDPGGDPVFITIIMQQPGNADLDPVQGLSNYGQTVITFGDASPFQLRSINYAVKPIPPAYLGVWYSEKNAYFDDTSWAAAGEDPNNARDYYRAPKFDGYSIGTVVPITKETPLNDGNFGYGDIEERYPGFLPCDGATFAAADYPWLWEAIGNTYGGNGAYIPATKSYTGNFNVPDYRNVRMVGAGIVDSNRGSSSFVPVTSAGGSFELTGSTGGYWYVDDVDVAGPDPLEQVVAPAGSSDGIESEYFTLGTPRTFGTEELEADVEFTVTGEVVANIGPVSDVSVRPPQHEHEVISGQIDSDDGDPLIPWGTRAYYGTSASGSQNWSGRPDSDTDAVDDGYWEDAGFWNFGQFNSEVENSGRGSLLDLLPGVGSSSVAFGNYWGSPFSEISGLSDDYFTKNGNPNNGDCGVIDTTETRARIDNYLSIYTGTLNHSHLLGTDPVTNPQTDFSYGNVNSDATAFRQGLATFNSIFALKFTQNASTDGGSGVDIELNPATFSWNNTSKPIPTAAMNPQRKVPIIAPFHKVKYIIKAY
Physico‐chemical
properties
protein length:1057 AA
molecular weight: 112617,08270 Da
isoelectric point:4,06452
aromaticity:0,10123
hydropathy:-0,21968

Domains

Domains [InterPro]
DC_0346
STR
1–1041
DC_0346
IPR037053
ATT
620–701
IPR037053
SSF88874
STR
652–742
SSF88874
IPR011083
ATT
652–702
IPR011083
YP_004324409.1
1 1057
Architecture
STR
ATT
STR
STR 1-619 | ATT 620-702 | STR 703-1041 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324409.1
1 1057
Domain Start End Length (AA) Confidence
N-terminal 1 705 705 0,8106
Central domain 706 904 200 0,6650
C-terminal 905 1057 152 0,7326
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-705
Central
706-904
C-terminal
905-1057

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage Syn1
[NCBI] 		444861 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus syn1
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324409.1 [NCBI]
Genbank nucleotide accession
NC_015288.1 [NCBI]
CDS location
range 42153 -> 45326
strand +
CDS
ATGCCATATCAGTTTAGTGCCAGTCCGCTGTATGTTGAAGAGGGACAGTCTATCCAGTTTCGTTACGAAGCTCCTCCTCTGTTCAACGATATTACTCAAGTCAAGATTGAGATTGGCGAGCTTACTGTCTTCTGGATTATTGAGACTAAACTAGAAGATTTTGAACCTGATCCGTTCTTCCTTAGAAATGTTGATGATGCAGAACCCGATACTCTATTAACATATGCAGCAACAACAGATCCTGATAATGGTGTTGCATATACTGGACTAGCAAGTGATCCTGATCCACTAAGAGAAGGTGAAGAAGTTATTACAATCACTGGTCTTGATCCTGGAACACAGGCACCATTGATTGTTAGTTCCAATGTTATTGATGTAAACAACTGGTCTTATCGTCTAAGACTATACAATGAAGGATCCAGTAGTTATGGTGCTTGGGGTGCATGGACTAGAGCACTTAACAATACCGTATCTAATCTTGACCAGATTCAGGTCAGACTAGTATCTTCTTCTTCACCATCAGACACAAAGAATGTTGTTGTTACTGTTGGAACAGGTTCTGCTACTTGGGATGTTACAACTGGTGCAATTCCAGTCAACACACCAAATCCAGCACCAGATTTTGGTTCGCTAAACAATCTACCACTAGGACAACTTGTATACAGTGATATTGCACAAATTCTAGGATTAACTACTTCTGCTATCATTAGTGTTGATAATGGTGCAGAGATTGCAGTATCTAATTTTAATACTACATTTACTAATGCTGATGGATATGAAGTTCTGAATAATATTTCAAATGGATGGGGCAACAACCTGACAGTAAGTAATGGTCAGTATGTTCAGTTAAGGGGCACATCATCAGCAACACCAACAGCAACTATTAACTTCAGTGTTACTGTTGGTGATGGTGCTGGTATTTCTGTATGGCAGATTACATCTGGACAAGGTATTGATGATAATCCAACTAATTTTGTATTCCAAGATCTAGTTGGTCAGATTCCTGGACAAACTGGTCTTAGATCAGAAACTGCATCAGGTTCTTCTACATCAGTTGCTGGCAGAAATGTAGCACTGGTTGGTGGACTTGACGCTGGACTATTTGTTCCTGTTACAGTCAGACCTGCTGATACTAATATTGTTCCTAAGATTAGTATTAATGGTGGTTCTTCTGGTCTCATCAACAATGTCACAGTTCAGAATGGTGATACTATCGAACTGGTTGTTGATAACTCTACAGATATCACTAACCCTGTAATTCCTGGTCAAGGTGTTGTTACTGTTGGTATTAACGTAGGAAACAGATTTATTCAGACATGGACTGTAGCAAACTGGACTGGTCCAGATACTATTCCAGCATTCACACCTATCAACCAAGTTATCAATAGAACTCCTGGTGGTGCTAGTATCATTGGTCCTATTGGATTGACTGACTTCAATCTACCAATCACTATTAGTGCAACAAATCCTGAATCATTTAATGAATTTAACTTTGCTACCAATGAGAACATTGGTGATGTTCTATTCTCAATCAATGGTGATTCAGCAACTGTAGGACCACGAACAGTTAATCCTGATCCTGGTGGTGATCCTGTATTCATCACTATTATTATGCAACAACCTGGGAATGCAGATCTTGATCCTGTTCAAGGACTGTCAAATTATGGTCAAACAGTCATTACATTTGGTGATGCATCTCCATTTCAGTTGAGATCTATCAACTATGCTGTTAAACCTATCCCTCCTGCATATCTTGGTGTGTGGTATTCTGAGAAGAATGCATATTTTGATGATACATCATGGGCAGCAGCAGGCGAAGATCCTAACAATGCTAGAGATTACTATAGAGCACCTAAGTTTGATGGTTACTCTATTGGAACTGTTGTTCCCATCACTAAAGAAACACCACTAAATGATGGTAACTTTGGTTATGGTGATATTGAAGAAAGATATCCAGGATTCTTACCATGTGATGGAGCAACCTTTGCTGCAGCAGATTATCCTTGGTTGTGGGAAGCAATTGGTAACACATATGGTGGCAATGGTGCATATATTCCTGCAACTAAATCCTACACTGGAAACTTCAATGTTCCAGACTATCGTAATGTTAGAATGGTAGGTGCTGGTATCGTTGACTCTAATAGAGGATCATCTTCTTTTGTTCCTGTAACAAGTGCTGGTGGTTCATTTGAACTGACTGGATCAACTGGTGGTTACTGGTATGTTGATGATGTTGATGTTGCTGGTCCAGATCCACTAGAACAAGTTGTTGCACCTGCTGGATCTAGTGATGGTATAGAATCAGAATACTTTACACTAGGAACTCCAAGAACATTTGGAACTGAAGAACTAGAGGCAGATGTTGAATTTACTGTCACTGGTGAAGTTGTTGCTAACATTGGTCCTGTTAGTGATGTTTCTGTTCGTCCTCCACAGCACGAACACGAAGTGATTAGTGGACAAATTGATAGTGATGATGGTGATCCACTCATTCCATGGGGCACTAGAGCATACTATGGCACATCTGCTAGTGGTTCACAAAACTGGAGTGGAAGACCTGATAGTGATACAGATGCTGTTGATGATGGTTACTGGGAAGATGCAGGATTCTGGAACTTTGGTCAGTTTAATTCAGAAGTTGAAAACTCTGGCAGAGGATCACTTTTAGATCTGTTGCCTGGTGTAGGTAGCAGTAGTGTAGCATTTGGTAACTACTGGGGTTCACCATTCTCGGAGATTAGTGGTCTAAGTGATGACTACTTCACTAAAAATGGTAATCCAAATAATGGTGACTGTGGAGTTATTGACACAACAGAAACTCGTGCTAGAATAGATAACTATCTGTCTATCTACACTGGCACACTAAATCACTCTCACTTACTAGGAACTGATCCTGTTACTAATCCACAAACTGACTTTAGTTATGGTAACGTCAACTCAGACGCTACTGCATTCAGACAAGGACTAGCAACATTCAACTCTATATTCGCACTTAAGTTTACTCAGAATGCATCGACAGATGGTGGATCAGGTGTTGATATTGAGCTCAATCCAGCAACATTCTCATGGAACAATACCAGCAAACCAATTCCTACTGCTGCTATGAATCCACAGCGCAAGGTTCCTATCATTGCACCATTCCATAAAGTTAAATATATAATTAAGGCATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0312b31eeaa28c545f829dd25ed8fa557d14ade1d0098a3545a0796955ba282b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5089
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank