Protein

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Genbank accession
XYL02948.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MADLKSNSTVGGSPIWHKGNFPLFPTGDTLLFKTYKVYTEKDKPQAIDNDFVSKAQGGTYAESVRFSKGLTFNDKQGNPVTLGVPKSTIPDITYKASLQVTGPFALETPDGQPFVIFDPDKTNGVYRLITMGNVLGNEVYDSSGRTFSPGNPPTKTQVGLPLVDNAKQVQLQNSTLQTMSGPLAAPNFFSNLPATENGHVPRFDQIVIKDSIQDFGYYS
Physico‐chemical
properties
protein length:219 AA
molecular weight: 23819,45030 Da
isoelectric point:6,09623
aromaticity:0,10502
hydropathy:-0,40639

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYL02948.1
1 219
Domain Start End Length (AA) Confidence
N-terminal 1 198 198 0,9917
Central domain 199 208 11 0,1117
C-terminal 209 219 10 0,8486
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-198
Central
199-208
C-terminal
209-219

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SAg-RPN19
[NCBI] 		3452860 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Agona
[NCBI] 		58095 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02948.1 [NCBI]
Genbank nucleotide accession
PV890570 [NCBI]
CDS location
range 62270 -> 62929
strand +
CDS
ATGGCCGATTTAAAATCAAACAGTACAGTCGGTGGTTCACCTATTTGGCATAAGGGCAATTTCCCTCTATTTCCAACCGGTGACACGCTGCTCTTCAAAACATACAAGGTTTATACCGAAAAAGATAAACCTCAGGCTATAGACAACGATTTCGTTTCTAAAGCACAAGGCGGAACTTATGCAGAATCCGTTAGATTCAGTAAAGGCCTAACCTTTAATGACAAGCAGGGTAATCCAGTGACACTTGGGGTTCCCAAGAGCACTATCCCTGATATAACATATAAAGCTTCACTTCAAGTTACTGGTCCATTCGCTCTGGAAACACCAGACGGTCAACCATTCGTTATCTTTGACCCAGATAAAACTAATGGAGTATATCGTCTTATTACTATGGGTAATGTACTTGGTAATGAAGTGTATGATTCAAGCGGACGTACATTTTCTCCTGGTAATCCACCAACTAAAACACAAGTAGGTTTACCACTGGTAGATAATGCTAAGCAAGTACAATTACAAAATTCTACTCTTCAAACGATGAGTGGTCCTTTAGCTGCTCCTAATTTTTTTAGTAATTTGCCTGCAACAGAAAATGGTCACGTTCCACGCTTCGATCAAATCGTTATAAAAGATTCAATTCAAGACTTCGGATATTATAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
60b01baf4a01df040a84c1b52c189777fbb8501db325d5e508791c2fde08acb9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8403
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genome analysis of Salmonella phage vB_SAg-RPN19 Imklin,N., Jaipakdee,S. and Nasanit,R. 2022-01-10 — GenBank