Protein

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Genbank accession
YP_009882795.1 [GenBank]
Protein name
structural protein with Ig domain
RBP type
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MPTITVLVAPEVVRNKPETERLHTVTGTAKGWEKTSLNQDPDEILTECKGLDALLTKSNLQADGVTKVDPTKPIGFEISYEIHDPSAVLTTGLTITPATAGGEVGQVVELLATVAPANATYQGVNWYSGDITKAVHIGGGKFKLLAPGSVTVYGVTIEGGHTDSTVITVAGALALSTDLAASQDVTAGEDATFTIAATGGTTPYTYAWYFSDVPGGEGVVIDAGANATAATASLVITAVDAADEGEYWCVVEDADGHSVASTRCEMAVV
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27645,52460 Da
isoelectric point:4,30626
aromaticity:0,05948
hydropathy:0,12045

Domains

Domains [InterPro]
DC_0400
STR
2–269
DC_0400
G3DSA:2.60.40.1080
STR
86–170
G3DSA:2.60.40.1080 IPR013783
IPR003343
STR
91–160
IPR003343 IPR007110
IPR003599
STR
180–269
IPR003599
IPR036179
RBD
181–263
IPR036179
PF13927
STR
183–252
PF13927
cd00096
STR
191–262
cd00096
YP_009882795.1
1 269
Architecture
STR
STR 2-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage MK-13
[NCBI] 		2530042 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Shigella boydii
[NCBI] 		621 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009882795.1 [NCBI]
Genbank nucleotide accession
NC_049455 [NCBI]
CDS location
range 34814 -> 35623
strand -
CDS
ATGCCAACAATCACTGTATTAGTAGCACCGGAAGTTGTTCGCAACAAACCGGAAACCGAGCGTCTGCACACCGTGACAGGCACTGCCAAGGGTTGGGAAAAGACCAGTCTTAACCAAGACCCTGACGAGATCCTGACCGAGTGTAAAGGCCTGGATGCACTTCTGACCAAGAGCAATCTTCAGGCTGATGGCGTGACCAAAGTTGATCCAACCAAGCCTATCGGCTTCGAGATCTCTTACGAAATCCACGACCCAAGCGCCGTGCTGACCACTGGCCTGACCATCACCCCTGCGACTGCTGGTGGTGAAGTCGGTCAGGTTGTTGAACTGCTGGCGACCGTCGCTCCGGCGAACGCGACCTACCAGGGTGTCAACTGGTACTCTGGTGACATCACCAAAGCTGTACACATCGGCGGTGGTAAATTCAAGCTGCTGGCTCCTGGTTCTGTGACTGTGTACGGTGTTACCATCGAAGGTGGTCACACTGACTCTACCGTCATCACAGTGGCGGGTGCGCTGGCTCTGTCTACTGATCTGGCTGCTTCTCAGGATGTAACAGCAGGTGAAGACGCAACCTTCACCATCGCTGCTACAGGCGGCACTACCCCATACACATATGCTTGGTACTTCTCTGATGTCCCTGGCGGTGAAGGTGTGGTGATCGATGCTGGCGCCAACGCCACTGCTGCAACTGCGAGCCTGGTTATCACTGCAGTTGATGCCGCAGACGAGGGTGAGTACTGGTGTGTTGTTGAAGACGCCGACGGCCACTCTGTGGCCTCCACCCGTTGTGAAATGGCTGTGGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c0751f70f899db7c4b590dabbf0a8de45ae9701fbd7cc5dd194f24e0d9a32526
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7289
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prevalence of Shigella boydii in Bangladesh: Isolation and characterization of a rare phage that can robustly identify Shigella boydii type 1 Akter,M., Brown,N., Clokie,M., Yeasmin,M., Tareq,T., Baddam,R., Azad,M.A.K., Ghosh,A.N., Ahmed,N. and Talukder,K.A. 2019-11-07 — GenBank