Protein

View in Explore
Genbank accession
QQM15978.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 0,53
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAKIFNRPFATTGDREDLPVSDQPDGKASWDAGWTPDYELPSDNPNSRPVGRQEMNGVLHGVTEALGELQLFGFAKWQAVVGGWPLGAMAYHGGAVYKSTDGANTTQPGSPGAKWELAFWHSAALTGNPTAPTQAPGNVSTRIATTEFVAQELTRAIKDIPGVVRRVYTSNATWKKPAGLKSALVQVQGGGGGGGGTISTTATNRAVIGAGGGAGGYVEALISADALPAEVLVTHGASGGGGAVSGSGAAGGASSFGAILTASGGGGGGAGQVQQAAVTRGLAAGGVAGATSASAIGALSYGGESGGIGFSFAAAGAGISGNGGSSHLGVGGPSVAEGSPGLNASGYGAGGSGGCSGSPSGSDSGRPGGSGSPGVVIVTEYY
Physico‐chemical
properties
protein length:382 AA
molecular weight: 36693,80150 Da
isoelectric point:5,73593
aromaticity:0,06545
hydropathy:-0,05654

Domains

Domains [InterPro]
DC_1790
STR
45–382
DC_1790
IPR049304
STR
170–379
IPR049304
QQM15978.1
1 382
Architecture
STR
STR 45-382
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bordetella phage BAPh-3
[NCBI] 		2801362 Viruses > unclassified bacterial viruses >
Host Bordetella avium
[NCBI] 		521 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQM15978.1 [NCBI]
Genbank nucleotide accession
MW168446 [NCBI]
CDS location
range 17936 -> 19084
strand +
CDS
ATGGCAAAGATTTTCAACCGACCTTTTGCGACGACCGGCGACCGCGAAGATTTGCCTGTATCGGATCAGCCGGACGGCAAGGCATCGTGGGACGCTGGCTGGACCCCGGATTACGAGCTCCCGAGCGACAACCCCAATTCCCGCCCCGTTGGACGGCAGGAAATGAACGGGGTGCTCCACGGTGTCACGGAAGCGCTTGGTGAGTTGCAGTTGTTCGGGTTTGCTAAGTGGCAGGCGGTTGTGGGCGGCTGGCCGCTGGGCGCAATGGCGTACCACGGCGGCGCAGTCTACAAATCCACTGATGGGGCGAACACCACTCAGCCCGGCTCCCCTGGTGCTAAGTGGGAACTTGCTTTCTGGCATTCGGCCGCCCTTACCGGAAACCCCACGGCGCCGACACAGGCGCCGGGCAACGTCAGCACTCGCATCGCCACTACCGAGTTTGTAGCGCAAGAGCTGACCCGAGCCATTAAAGACATTCCGGGCGTCGTGCGCCGCGTTTATACGTCGAATGCGACGTGGAAGAAACCGGCAGGCCTCAAGTCCGCTCTTGTACAGGTGCAGGGCGGTGGCGGCGGTGGCGGCGGAACGATCAGTACAACGGCTACCAATCGGGCAGTGATTGGAGCGGGCGGAGGCGCTGGGGGGTATGTCGAGGCGCTCATCAGCGCTGACGCGCTGCCCGCGGAGGTTCTTGTTACTCACGGCGCTTCGGGCGGTGGCGGCGCCGTATCTGGCTCGGGCGCAGCGGGAGGCGCGTCCAGCTTTGGGGCAATCCTAACCGCGAGCGGCGGCGGTGGCGGAGGTGCGGGGCAGGTGCAACAGGCCGCTGTAACTCGCGGACTCGCTGCGGGCGGGGTGGCAGGTGCCACGAGCGCGTCCGCGATCGGCGCCCTTTCTTATGGCGGGGAAAGTGGTGGCATTGGCTTCTCCTTCGCGGCCGCAGGCGCCGGAATTTCTGGCAACGGAGGGTCGTCGCATCTAGGGGTTGGAGGCCCGTCGGTTGCCGAGGGCAGCCCTGGCTTGAACGCATCTGGCTATGGTGCGGGCGGGTCTGGGGGGTGCTCTGGATCGCCGTCCGGCAGTGATAGCGGTCGTCCTGGTGGCAGCGGGTCTCCGGGCGTCGTGATCGTCACGGAGTACTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2c9b7ad0ba2bce0ef9cb1360417784e3da9344e1ac325ba3ba649ed59aca04bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8892
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of Bordetella phages Churin,Y., Serian,D., Guetgemann,F., Mueller,A., Hammerl,J.A. and Kehrenberg,C. 2023-06-15 — GenBank