Protein

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Genbank accession
QIG70792.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVATITSKLASGSTITIGGKANAGKIVRGFIGNTAFSTTADSNGNWSAVASNQPTGSITLRAREFNTQVVPSIREMEISMARLRLTGATTQNTIYPVVSGNLFLENGAPVQDRILVFEYRLNGETEWILDGTELSDSSGTASHTFVNVLEDNTWQVRVTAGTIANGLVEIISNTLTIVTNKPNEAPVLPPSYDKWIDGNREGKYGYMGYMIIAQGSASGTEFGRILPLNNPKPAATYSIPANANFAINSSTGMITLTNSSLAAGTYYVTITASNAAGSSECTVPLIVTGIVSRVYYVDNELGSDTNDGRTPAVPLKTLSAANSKRGGDIFSTYTLRFKRGVVWNLTGATAPRNLTNYEAYGDPSKEPPHFINMNTGGKIFDYQGASGQINTINYRDLKLTASHTAIDVQNWITGNVIRIKFGVNVEFGHAMYLHDARGVSILHCYVPSGINGDGFYLRKFGRGATPNRLSFCEFGIPYGTGSDNVQITSERKSGMQPSNVEVSDNIFRHSVTSNATKGNIVIEDGDRIVFERNDCIGNYFCFSQLSRFVTVRDNILRGSILNDNSFGVGSGALDHTHDCRILFNRIEGNWFAIALSGFDDPDGGWQRADYEIFYNMTRKNKAFAKQDRPASGFLKDNVSEQNNSNGISGNGGPASSFTNSAGTTVTPDYATFERGPNFINSALTSSTAASPTISGTVSVGSTLTVTVPSISGATSAVQWLINDQKVVGETSLTFVVPSGSPVNPYMPSNINTPTVSCGVIYTLADGSTLIIPARYDDGKITRMIS
Physico‐chemical
properties
protein length:785 AA
molecular weight: 84232,07660 Da
isoelectric point:6,19706
aromaticity:0,08917
hydropathy:-0,18369

Domains

Domains [InterPro]
IPR013783
STR
2–69
IPR013783 DC_0928 DC_0805 DC_2066
cd11304
STR
212–290
cd11304
cd11304
STR
215–290
cd11304
IPR011050
STR
285–743
IPR011050
QIG70792.1
1 785
Architecture
STR
ATT
STR
RBD
STR 2-69 | ATT 70-234 | STR 235-743 | RBD 744-782 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG70792.1
1 785
Domain Start End Length (AA) Confidence
N-terminal 1 184 184 0,7935
Central domain 185 703 520 0,9400
C-terminal 704 785 81 0,4677
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-184
Central
185-703
C-terminal
704-785

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_I1_18
[NCBI] 		2509726 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG70792.1 [NCBI]
Genbank nucleotide accession
MN988519 [NCBI]
CDS location
range 122709 -> 125066
strand +
CDS
ATGGTCGCAACGATTACAAGTAAATTAGCGTCTGGTTCAACGATCACGATTGGTGGAAAAGCTAACGCTGGAAAGATCGTGAGAGGGTTTATTGGAAACACTGCCTTCTCTACTACTGCAGATAGCAATGGCAATTGGTCAGCTGTCGCATCAAATCAGCCCACAGGAAGCATTACACTAAGGGCTCGCGAATTCAATACACAGGTTGTTCCCTCGATCAGGGAAATGGAGATTTCAATGGCTCGTCTGAGACTTACTGGCGCAACGACTCAAAATACGATTTATCCAGTCGTCTCTGGTAACCTTTTCTTGGAAAACGGCGCTCCAGTACAAGACCGCATTCTGGTGTTTGAATATCGCCTTAACGGTGAAACAGAATGGATTCTCGACGGAACTGAACTTTCCGATAGCTCAGGAACTGCATCTCACACATTCGTTAACGTTCTTGAAGATAACACGTGGCAAGTTCGTGTAACTGCAGGAACAATTGCAAACGGTCTCGTTGAGATCATCAGCAACACACTAACGATTGTTACCAACAAGCCGAACGAAGCTCCTGTTCTTCCTCCTTCTTACGATAAGTGGATCGACGGAAACAGAGAAGGCAAGTACGGCTACATGGGATACATGATCATCGCTCAGGGATCTGCATCCGGTACGGAGTTTGGTAGAATTCTACCTCTGAACAACCCGAAGCCAGCAGCTACGTACTCGATCCCAGCAAACGCCAACTTTGCGATCAATTCCAGCACTGGCATGATCACACTGACTAACAGCTCTCTTGCAGCGGGTACTTACTACGTAACGATCACTGCATCGAATGCTGCTGGTTCTTCAGAGTGCACTGTTCCGCTGATTGTCACGGGCATTGTTTCGAGAGTATACTACGTCGACAACGAGCTCGGAAGCGATACCAATGACGGTCGTACTCCAGCTGTACCTCTCAAGACTCTATCAGCAGCGAACTCGAAACGTGGTGGGGACATCTTCTCAACATACACACTACGATTTAAGCGTGGTGTTGTGTGGAATCTAACAGGAGCTACTGCTCCGCGCAACCTTACTAACTACGAAGCATACGGCGATCCGTCGAAAGAACCACCACATTTCATCAACATGAATACTGGTGGGAAGATCTTCGATTACCAAGGTGCTAGCGGTCAGATCAACACGATCAACTACCGCGACTTGAAGTTGACGGCTTCACATACCGCTATCGACGTCCAGAACTGGATTACAGGAAATGTCATTCGTATTAAGTTCGGCGTCAACGTCGAATTTGGTCACGCGATGTACCTCCACGATGCTCGTGGAGTTTCGATCTTGCACTGCTATGTTCCTTCTGGTATCAACGGTGACGGATTCTATCTACGTAAATTCGGTCGTGGTGCAACACCAAATCGTCTATCATTCTGTGAATTCGGCATCCCTTACGGTACCGGTTCGGATAACGTTCAGATTACCTCTGAACGTAAGTCTGGTATGCAGCCATCCAACGTTGAAGTTTCTGACAATATTTTCAGACACTCTGTTACGTCAAACGCAACGAAAGGCAATATCGTTATTGAAGATGGTGATCGAATCGTTTTCGAACGAAACGATTGCATCGGAAACTATTTCTGCTTCTCACAGCTTTCACGTTTCGTCACTGTCCGTGACAACATCTTGCGTGGATCGATTCTGAACGATAATTCGTTCGGTGTTGGATCCGGAGCTCTTGACCACACTCACGATTGCCGTATCCTGTTCAACCGTATTGAAGGAAACTGGTTTGCTATTGCTCTATCGGGCTTCGATGACCCCGACGGTGGATGGCAGCGTGCTGACTACGAAATCTTCTACAATATGACGCGCAAAAACAAGGCTTTTGCGAAACAGGACCGTCCAGCATCAGGATTCCTGAAAGATAACGTATCTGAGCAGAATAACAGCAACGGTATTTCCGGCAATGGTGGTCCTGCCTCCAGCTTCACAAACTCAGCTGGTACAACTGTTACGCCAGACTACGCAACTTTCGAACGTGGCCCAAACTTCATCAACTCAGCACTGACAAGCAGCACAGCTGCAAGTCCGACTATCTCTGGTACGGTTTCTGTTGGTTCTACGCTGACAGTGACAGTTCCTTCGATTTCAGGGGCGACATCGGCTGTTCAGTGGTTGATCAACGACCAGAAAGTTGTCGGTGAAACAAGCCTGACGTTTGTTGTTCCAAGTGGATCTCCTGTCAATCCGTATATGCCATCCAATATCAATACACCGACAGTCTCGTGTGGTGTGATATACACATTGGCAGACGGTAGCACATTGATTATTCCTGCTCGTTATGATGACGGCAAAATCACACGAATGATTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
93934ec6ea8fcb2c6640061d9b487ce7a4f358d36355137e43548817a6b908dd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank