Protein

View in Explore
Genbank accession
USL85118.1 [GenBank]
Protein name
pyocin knob domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,83
Protein sequence
MITPELIPSPFAAQGDKDPIPQTSSTGFANLRDGYTPDYEISLASNNPQAKAVERKIQNQLFFIATQNAQAWQRQMAPPWFQGMPGGYEQNAEVVRVGNDGIMRRYRSMVNANASDPLSSTTWEEQPAWSAMRSNIPMPAGGPGLSSGGEVITTGRNFNDLLNGTWEFFSDSVVIASQNAPVYPASAGAAAGMLEAKSWVSGANTFCVQRYTDRVGNVAVRGLNAGAWTNWMYAVNVMALQQGRVTYGVAAGPANAYTLTLVPQIQGGLVDGMILRVKFNTMNTGATTINVSGLGAKAIVGAANFPLTGGELGQGLIAELVFDATGDRWRILAGAPRIQVGNADQDYQAPSWKQVKDYVASQKLTEVDWADVVNKPNVAIQDTTPWFANLELSDARPFIDFHFNNNRAKDFDYRFISEADGSMAFYSRQGSAGPTQDILFSRSNVTFLQPRLDVAKNLAYIANSGPLWQNTTADQPGWKFTFAQGVDANNNAVIAVNTTNPDGSYRSQIMRWDWASTNVIFNNRPLFAGQYTPWDSGNFDPSTKLTVNATNQIAGPTGIRNTNGNTGNMNTWGSSSTTASYGNAALQIFGKGGGEPAALYFDNSQTGWYLGMDKDGQLKRAGWSLGNNAYVITDESNIRFHVNSMAGTPVWGGNEFWGPWNFNPNTKLTIKAGTQETSSTAIFSGTMPFAPIASLSDYSQAPLTVYNAPTGPSAKPAVIAFIRPGNWGAFFGIDTDNKLKWGGGSLGNSSREIADSSNIMNLWAANPTAPSWNGQTVWRSGNFDPATKVDLNAANATNGNMIFNRISGTGSGIASSGRVGAINLQNGAHSGQAAAVTFERGGSIFVNFGLDTDNVLKVGGGNLGANAYPVIHAGNYNNYINQALVQVGLGGVGSYGIFAVLDNAAPTATVQPGVVVDGSILIYSSCAANYNSGQRPAGTWRCMGYVVNRDANTPDSATLFQRVT
Physico‐chemical
properties
protein length:964 AA
molecular weight: 102986,25480 Da
isoelectric point:5,66153
aromaticity:0,10477
hydropathy:-0,26017

Domains

Domains [InterPro]
DC_0009
ATT
1–211
DC_0009 DC_1924
cd19958
STR
152–231
cd19958 DC_1924
DC_1788
STR
167–694
DC_1788
USL85118.1
1 964
Architecture
ATT
STR
RBD
ATT 1-211 | STR 212-694 | RBD 695-964
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ka2
[NCBI] 		2945904 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USL85118.1 [NCBI]
Genbank nucleotide accession
ON529291 [NCBI]
CDS location
range 2642 -> 5536
strand -
CDS
GTGATCACACCCGAACTGATCCCCAGTCCGTTTGCCGCTCAGGGCGATAAAGACCCGATTCCACAAACCTCCTCCACTGGCTTCGCAAACCTTCGCGACGGCTATACGCCGGACTACGAAATCAGCCTGGCGTCGAACAACCCGCAGGCCAAAGCGGTCGAGCGGAAAATTCAAAACCAACTCTTCTTCATCGCGACCCAGAACGCACAGGCGTGGCAGCGACAAATGGCGCCGCCGTGGTTTCAGGGCATGCCTGGCGGCTACGAACAGAATGCAGAAGTCGTGCGCGTCGGAAATGACGGCATAATGCGGCGTTATCGTTCCATGGTGAATGCCAATGCGAGCGACCCTCTCAGCAGCACGACTTGGGAAGAACAACCCGCATGGTCGGCGATGCGCTCCAACATCCCGATGCCGGCCGGAGGCCCAGGCCTATCTTCTGGCGGAGAAGTCATCACGACCGGCCGCAACTTCAACGACCTGTTAAATGGGACGTGGGAGTTCTTCTCTGATTCAGTGGTTATCGCTTCTCAGAATGCCCCCGTATATCCGGCTTCCGCTGGTGCCGCTGCTGGCATGTTGGAGGCGAAATCTTGGGTGTCCGGAGCCAATACGTTCTGCGTCCAACGCTACACTGATCGCGTCGGGAACGTCGCTGTGCGCGGGCTTAATGCCGGAGCGTGGACCAACTGGATGTATGCGGTAAACGTCATGGCCCTTCAACAAGGTCGGGTTACCTATGGAGTCGCGGCCGGTCCGGCGAATGCCTACACCTTGACTCTCGTTCCGCAGATCCAAGGTGGTTTGGTAGATGGCATGATCCTTCGGGTCAAGTTCAACACCATGAACACCGGCGCTACTACCATCAACGTCTCCGGACTCGGCGCCAAAGCCATCGTCGGCGCGGCCAACTTCCCTCTCACTGGCGGCGAACTCGGCCAAGGTCTCATCGCTGAGCTTGTATTCGACGCCACCGGCGACCGCTGGAGGATTCTCGCAGGCGCGCCACGCATCCAAGTTGGCAACGCCGATCAAGATTACCAGGCCCCCAGCTGGAAACAGGTGAAGGATTACGTCGCGTCCCAAAAGCTGACTGAAGTGGACTGGGCTGACGTCGTCAACAAGCCGAACGTCGCTATCCAAGACACTACGCCGTGGTTCGCCAATCTGGAGTTGTCTGACGCTCGGCCTTTCATCGATTTCCACTTCAACAACAACCGCGCCAAAGACTTCGACTATCGCTTTATCTCTGAAGCTGATGGGTCGATGGCGTTCTACTCTCGCCAGGGGTCCGCTGGTCCTACCCAGGATATCCTGTTCAGCAGGTCGAATGTTACATTCCTCCAGCCGCGACTGGATGTTGCGAAAAACCTCGCGTACATCGCGAACTCTGGTCCCCTTTGGCAGAACACCACTGCCGATCAACCTGGTTGGAAATTCACCTTCGCACAAGGTGTGGACGCCAACAACAACGCTGTTATCGCAGTCAATACCACCAATCCGGACGGCTCCTATCGCTCACAGATCATGCGATGGGACTGGGCGTCCACGAACGTCATATTCAACAATCGTCCGCTCTTTGCCGGTCAATACACTCCTTGGGATTCTGGAAACTTTGATCCCTCCACCAAGTTGACTGTGAATGCCACGAACCAAATCGCCGGCCCGACCGGGATTCGGAATACAAACGGCAACACCGGCAACATGAACACATGGGGCTCCAGTTCCACGACGGCTTCATACGGAAACGCTGCTCTTCAAATCTTCGGGAAAGGTGGTGGCGAGCCTGCCGCGCTTTATTTCGACAACTCCCAGACAGGATGGTATCTGGGGATGGACAAGGATGGACAGCTCAAGCGGGCCGGCTGGTCGCTCGGCAATAACGCCTACGTGATTACCGACGAATCCAACATTCGTTTCCACGTGAATTCCATGGCTGGCACTCCTGTTTGGGGCGGAAACGAATTCTGGGGGCCGTGGAACTTTAATCCGAACACCAAGCTAACCATCAAAGCCGGCACCCAGGAAACTAGCAGCACTGCGATATTCAGCGGAACTATGCCATTCGCTCCAATCGCATCGCTGTCCGATTATTCTCAGGCCCCTTTGACGGTTTACAACGCGCCAACCGGTCCGTCTGCAAAACCGGCCGTCATCGCGTTCATTCGTCCTGGCAACTGGGGCGCGTTCTTCGGCATCGATACCGACAACAAGCTGAAATGGGGCGGCGGATCGCTCGGCAACAGTTCCAGGGAAATCGCCGATTCCAGCAACATCATGAATCTTTGGGCGGCCAACCCGACCGCGCCGTCCTGGAACGGCCAAACCGTTTGGCGATCCGGAAACTTTGATCCGGCGACGAAAGTGGATTTGAACGCCGCGAACGCCACCAACGGCAACATGATCTTCAACCGCATTTCTGGAACTGGTAGCGGCATAGCTTCGTCAGGTCGAGTTGGCGCCATCAACCTGCAGAATGGGGCGCATTCGGGGCAAGCGGCAGCAGTCACTTTCGAGCGGGGCGGCAGTATCTTCGTCAACTTCGGCTTGGATACCGACAACGTTCTCAAAGTGGGTGGCGGAAACCTGGGGGCAAATGCCTATCCGGTCATCCACGCCGGGAACTACAATAACTACATCAACCAGGCGCTGGTTCAGGTGGGTCTTGGCGGAGTCGGTTCCTATGGCATCTTTGCGGTTCTGGACAATGCCGCTCCAACCGCGACCGTTCAACCGGGAGTGGTTGTGGACGGTTCCATTCTCATCTACTCGTCTTGCGCCGCAAACTACAATAGCGGTCAAAGACCTGCCGGAACTTGGCGCTGCATGGGATATGTAGTCAACCGGGATGCCAACACTCCTGACTCCGCGACCCTTTTCCAGCGAGTGACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3cecc9de3f5444313733c8b63bb046491f0eab66472c7a50ba3cd22d47ad95ee
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3038
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Evaluation of the synergism of phage therapy with antibacterial drugs in relation to Pseudomonas aeruginosa in biofilms Ilyina,V.N., Gatina,A.E., Kayumov,A.R., Palagina,V.G., Sinyagina,M.N., Ozhegov,G.D., Gorshkova,A.S., Dryukker,V.V. and Evseev,P.V. 2025-08 — GenBank