Protein

View in Explore
Genbank accession
YP_012812078.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDQEIKTVIQYPTGATEYDIPFDYLSRKFVRVSLVSDDNRRLLSNITEYRYVSKTRVKLLVSTTGFDRVEVRRFTSATERVIDFSDGSVLRANDLNVSQLQSSHIAEEARDAALMAMPQDDAGNLDARNRRIVRLADGIEPTDAVNKNQLDETLGDAGGILSEVKEVQQEIGDYIEEFTNGTTYLKNIVMVYNQGSAVGGETTIVINRPDPVFAVPTIYINGDRQDVGYQYEYNNVTKTITLVKPLHQGDFVVMMTSEGTHSLSSILAGPNGAAGIGTRDGLTVQEALDRIFASRLVLPQWFGARGDWSDVTNTGTDDTAAFEAAIEMAVLLNYTEVFVPAGSYLITRELNLNGGNKNTRLGARIRGAGWASSVLVFKAPTVDTPCISIIGTPGSHTSKGVEKLLIKAHPQTVGHGIGILCRNTCFAHVTEFIIANLNVGIRLENYMTAGSFTEFCYFTNGRLFTNNINIQFNKVQNGDNSFHGSNFKNIQNQVKKNGGIGVQIVGNPQGAAYLYNMTWDMQFFGGAGCIAMDLNYCNTDYVGGKLTGESDLTFKADGKSRFDFHGRFDSIGKVIWDTATEGARTGGTYVFANRTSLENAVMTYADAGRLPAGVAARPLPADWADRNNNGVYPATFHIRGPNIDSMGFVTYNSQGNGFYFGQLPFQGNIKDFNPSFWFSSGGTSFNTAATAYTMKLVNGEGLYFSDTTIRALSDGNVSLGEWNRRFKEARFSSWDITAHIVPTSTASKDIGSNTNRVRDLYLVNAPNVTSDSRKKSFIKPIDDALLDAWETIPFSQWKLNDSVAQKGDAARWHVGYIAQKVEEALKAKGLNPDAYGLITYGEDGWMLRMEECLAVESAMIRRKLGLTYR
Physico‐chemical
properties
protein length:869 AA
molecular weight: 95635,19270 Da
isoelectric point:5,70916
aromaticity:0,10127
hydropathy:-0,27135

Domains

Domains [InterPro]
DC_0778
STR
1–505
DC_0778 IPR036388
IPR005604
ATT
2–127
IPR005604 IPR011050 IPR030392
IPR011049
STR
85–184
IPR011049 IPR012334 cd10144
IPR011049
STR
126–153
IPR011049 IPR030392
YP_012812078.1
1 869
Architecture
ATT
STR
RBD
CHP
ATT 1-127 | STR 128-557 | RBD 756-844 | CHP 845-869
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012812078.1
1 869
Domain Start End Length (AA) Confidence
N-terminal 1 307 307 0,9956
Central domain 308 615 309 0,9790
C-terminal 616 869 253 0,9088
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-307
Central
308-615
C-terminal
616-869

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage Amrap
[NCBI] 		3018530 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Przondovirus
Host Klebsiella oxytoca
[NCBI] 		571 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012812078.1 [NCBI]
Genbank nucleotide accession
NC_111672.1 [NCBI]
CDS location
range 33358 -> 35967
strand +
CDS
ATGGACCAAGAAATTAAAACAGTCATCCAGTACCCTACGGGAGCCACGGAGTATGACATTCCGTTCGACTACCTGTCCCGTAAGTTTGTTCGCGTGTCTCTGGTGTCAGATGACAACCGAAGACTGCTGAGTAACATCACTGAGTATCGCTACGTGTCTAAGACCCGTGTGAAGCTCCTCGTGTCTACTACTGGTTTCGACCGTGTTGAAGTTCGACGCTTCACTTCGGCTACCGAGCGTGTTATCGACTTCAGTGACGGTTCAGTCCTTCGAGCTAATGACCTTAACGTGTCCCAGCTGCAATCCTCACATATCGCTGAGGAAGCTCGTGATGCTGCCCTTATGGCTATGCCTCAGGACGACGCTGGGAACCTCGACGCTCGCAATCGCCGTATCGTACGGTTGGCTGATGGTATCGAACCAACTGATGCTGTCAACAAGAACCAACTGGACGAGACTCTTGGTGATGCTGGCGGTATCCTCTCAGAAGTCAAAGAGGTCCAGCAGGAGATTGGGGACTACATCGAAGAGTTCACGAACGGTACAACTTACCTGAAGAACATTGTAATGGTGTACAACCAAGGGTCTGCCGTGGGTGGAGAAACTACCATCGTCATCAACCGACCTGACCCGGTGTTTGCCGTCCCGACCATATACATTAACGGTGACCGTCAGGATGTTGGATATCAGTACGAGTACAATAACGTGACCAAGACAATCACTCTGGTCAAGCCGTTACACCAAGGCGACTTCGTGGTCATGATGACCTCCGAAGGTACTCACTCACTGTCATCCATTCTGGCTGGTCCTAACGGTGCGGCTGGTATTGGTACACGCGATGGCCTGACCGTTCAGGAAGCTCTGGACCGCATCTTTGCGAGCCGTCTGGTTCTGCCTCAGTGGTTCGGTGCTCGTGGTGACTGGAGTGATGTTACCAACACAGGTACAGACGACACAGCAGCATTCGAAGCAGCTATAGAGATGGCCGTCCTCCTGAACTACACTGAGGTGTTTGTACCAGCTGGCTCCTACCTTATCACTCGTGAGTTGAACCTTAACGGTGGCAACAAGAATACCCGTCTGGGTGCTCGCATCCGTGGAGCTGGCTGGGCTTCCTCTGTGCTGGTCTTCAAGGCACCGACTGTGGATACTCCGTGTATTTCCATCATCGGAACTCCTGGAAGCCACACGTCCAAAGGTGTCGAGAAGTTACTCATCAAGGCTCACCCTCAGACAGTAGGCCACGGTATCGGCATCCTATGTCGTAACACTTGCTTTGCCCACGTGACCGAGTTCATCATTGCGAACCTGAACGTAGGTATTCGTTTAGAGAACTATATGACCGCTGGGTCGTTCACCGAGTTCTGCTACTTCACGAATGGCCGACTGTTCACCAACAATATCAACATTCAGTTCAACAAGGTTCAGAACGGTGACAACTCGTTCCATGGGTCTAACTTCAAGAACATACAGAACCAAGTCAAGAAGAATGGTGGTATTGGTGTGCAAATCGTGGGTAATCCACAAGGTGCAGCCTACCTGTACAACATGACGTGGGACATGCAGTTCTTTGGTGGCGCTGGTTGTATTGCCATGGACCTGAACTACTGTAACACCGACTACGTTGGTGGTAAGTTGACTGGTGAGTCAGACCTGACGTTCAAGGCTGACGGCAAATCTCGGTTCGACTTCCATGGGCGCTTCGATTCTATTGGTAAGGTCATCTGGGACACTGCGACAGAAGGTGCTCGTACTGGTGGTACTTACGTGTTTGCCAACCGTACATCCCTTGAGAACGCAGTGATGACCTACGCTGACGCTGGGAGGCTACCCGCTGGCGTGGCAGCTCGTCCGCTTCCGGCAGACTGGGCAGACAGAAACAACAACGGCGTGTACCCTGCAACGTTCCACATCAGAGGGCCGAACATCGATTCCATGGGGTTCGTCACGTACAACTCTCAGGGCAACGGGTTCTACTTTGGACAGCTCCCATTCCAAGGGAACATTAAGGACTTCAACCCAAGTTTCTGGTTCAGCTCCGGTGGTACTAGTTTCAACACAGCGGCCACAGCGTACACCATGAAGCTCGTTAACGGAGAGGGTCTCTACTTCTCGGACACAACCATCCGTGCACTTAGCGATGGCAACGTGTCTCTGGGCGAGTGGAACCGCCGATTCAAGGAAGCCCGCTTCTCCTCGTGGGACATTACAGCGCACATCGTGCCGACCTCGACTGCCTCTAAGGATATCGGGTCTAACACTAACCGTGTGCGCGATTTGTACCTCGTGAATGCTCCTAACGTTACCTCTGACTCCCGTAAGAAATCCTTCATCAAACCTATCGATGATGCCTTACTGGATGCGTGGGAGACAATCCCGTTCTCTCAGTGGAAGCTGAACGACTCGGTAGCCCAGAAGGGTGACGCTGCGCGTTGGCACGTTGGGTACATCGCTCAGAAGGTTGAGGAAGCGCTCAAGGCCAAGGGCCTAAACCCGGACGCCTATGGTCTCATCACTTACGGTGAGGACGGATGGATGCTCCGCATGGAAGAATGCCTCGCAGTAGAGTCTGCAATGATTCGCCGTAAACTCGGCTTAACCTATCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
432265233393f0cbb31f3ff87116ebed25cc0e89c223ad695b4d7b562af4be88
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses Elek,C.K.A. and Adriaenssens,E.M. — — GenBank