Protein

View in Explore
Genbank accession
XNP01031.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALVELVTPKYYSLDNLWRKVQDRLAKDAPAMTDLVPDSSGNYAAAIQRAAAKGVRVLRVPSGTYTVGDCTLTTPVLFVGDGLEGIDPLGAVFVKPASSSFMFSFDGSSTRGLGGGFLRMHLRGETGSSTGDMVRVLSWSHFSLVDSAVNTFGGNALNLRDCMESRITGNLFRRIGAADGQVILIGAWVGNQNNNVNNLHIENNTFGFCTGAWIRSVANSNPDLIWINNNKFEWDNVPYGANTTPQYVIDLEQISRCWIMHNGFTHFRPDAVHNLYAGCIRIGSTALGPLEISHNKAYACEGYYWNIQGGYVDAFSNDSNLGDASTGLTWDLSSTRACRIMPPALFSNNLNRTGGDALFGPGFTSHAYLRGTSNLSRVADAGASARVALQVPAGSEMRRYTLPKHLLGSCVKVLLRVYNPDSAAKGITLNVAGTLNISGTVPAGPGWVDSEIFVGDTQTGTGDFRFINSSDVTLLLDGVTVSKATMLTVSFAWTPTPIAAGATLVSAAQFQPSSISRSPLGVGAPIFNGSTRGLMVSISNRSDYGNWEVLLYNPTGATITPTFTRCSFVIFLR
Physico‐chemical
properties
protein length:573 AA
molecular weight: 61458,73100 Da
isoelectric point:7,58718
aromaticity:0,09599
hydropathy:0,00960

Domains

Domains [InterPro]
IPR012334
STR
33–339
IPR012334
IPR011050
STR
36–325
IPR011050
IPR011050
STR
40–310
IPR011050
DC_0629
STR
265–573
DC_0629
XNP01031.1
1 573
Architecture
STR
STR 33-573
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNP01031.1
1 573
Domain Start End Length (AA) Confidence
N-terminal 1 42 42 0,9728
Central domain 43 349 308 0,9909
C-terminal 350 573 223 0,9933
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-42
Central
43-349
C-terminal
350-573

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage RothJ
[NCBI] 		3384155 Viruses >
Host Klebsiella sp.
[NCBI] 		576 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNP01031.1 [NCBI]
Genbank nucleotide accession
PQ657835.1 [NCBI]
CDS location
range 3969 -> 5690
strand +
CDS
ATGGCCCTGGTAGAGTTAGTAACCCCTAAGTATTACAGTCTGGATAACTTGTGGCGTAAAGTGCAAGACCGCCTGGCTAAAGACGCCCCAGCAATGACGGACCTAGTGCCGGATAGTTCTGGAAACTACGCAGCGGCAATACAGCGCGCGGCAGCAAAGGGGGTGCGCGTACTGAGAGTGCCCAGTGGAACATACACGGTAGGGGATTGCACCCTAACTACACCGGTGCTGTTTGTGGGCGATGGTTTGGAGGGTATTGACCCACTGGGCGCGGTATTTGTAAAACCGGCTAGTAGCTCGTTCATGTTCTCCTTTGATGGTAGCAGTACCCGTGGGCTTGGCGGCGGGTTTCTGCGTATGCACCTACGAGGGGAGACTGGGTCTAGTACTGGGGATATGGTTCGGGTACTGTCCTGGAGTCACTTCTCGCTTGTAGATAGTGCGGTGAACACTTTCGGGGGCAATGCGTTGAACCTGAGGGACTGCATGGAGAGCCGGATAACCGGGAATCTGTTCAGACGTATTGGCGCCGCTGACGGCCAGGTAATCCTGATAGGGGCCTGGGTTGGCAACCAGAACAACAACGTCAATAACCTGCACATTGAGAACAATACCTTCGGCTTCTGTACGGGTGCCTGGATACGTTCTGTGGCCAACAGTAACCCAGACTTAATCTGGATTAACAATAACAAGTTCGAGTGGGATAATGTCCCTTACGGTGCAAACACCACGCCGCAGTACGTCATAGACTTGGAGCAAATCTCCCGATGCTGGATTATGCATAACGGGTTCACGCACTTTAGACCTGATGCCGTGCATAACCTATACGCTGGGTGTATCCGTATCGGCAGCACTGCACTGGGTCCTCTGGAGATTTCCCACAACAAAGCGTACGCTTGCGAGGGGTATTATTGGAACATCCAAGGCGGCTACGTTGACGCTTTTAGTAACGACAGCAACTTAGGGGATGCTAGCACCGGATTAACGTGGGACCTTAGCAGCACCAGGGCGTGCCGCATTATGCCTCCAGCGTTGTTCAGTAATAATCTGAACCGCACAGGGGGTGACGCCTTATTTGGACCCGGGTTTACTTCGCATGCGTACTTGCGCGGAACCTCTAACTTGTCTAGGGTTGCTGATGCAGGAGCAAGCGCGCGCGTAGCTCTGCAAGTTCCCGCTGGGTCTGAGATGCGTCGCTACACTCTGCCCAAGCACTTACTGGGAAGTTGTGTGAAGGTGCTCTTGCGCGTCTACAACCCGGATTCTGCGGCAAAGGGGATTACACTGAACGTTGCGGGTACACTGAATATTTCTGGCACAGTGCCGGCAGGCCCAGGCTGGGTGGATTCTGAGATATTTGTTGGGGATACTCAAACAGGTACCGGGGATTTCCGTTTCATTAACAGCAGTGATGTAACCTTGCTGTTGGATGGGGTAACTGTAAGCAAAGCTACTATGCTTACTGTATCCTTTGCCTGGACCCCTACACCTATAGCGGCTGGTGCTACCTTGGTGTCCGCTGCACAGTTCCAACCTTCTAGCATAAGCAGGAGCCCGTTAGGTGTAGGGGCACCTATATTTAACGGGAGCACACGGGGGTTGATGGTAAGTATCAGCAACCGTTCGGATTATGGTAACTGGGAGGTGCTGCTGTACAACCCTACCGGTGCAACGATTACCCCTACGTTTACACGCTGTAGCTTCGTGATATTCCTGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
27bd62b3a2ad40002bfcd3e54dc4e9c341fdb97673ae04d0268555e8d7527fab
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7694
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
KlebPhaCol: A community-driven resource for Klebsiella research identified a novel gut phage order associated with the human gut Rothschild-Rodriguez,D., Lambon,K.S., Latka,A., Costa,A.R., Mantzouratou,A., King,C., Boeckaerts,D., Sheridan,E., Merrik,F., Drobniewski,F., De Angelis,I., Saeed,K., Sutton,M., Wand,M., Andrew,M., Hedges,M., Brouns,S.J.J., Haas,P.-J., Krishnakant Kushwaha,S., Lawson,S., Fordham,S., Lee,Y.-J., Wu,Y., Briers,Y., Weigele,P. and Nobrega,F.L. 2024 — GenBank