Protein

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Genbank accession
AGG68786.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSTITQFPSGNTQYRIEFDYLARTFVVVTLVNSSNPTLNRVLEVGRDYRFLNPTMIEMLVDQSGFDIVRIHRQTGTDLVVDFRNGSVLTASDLTNAELQAIHIAEEGRDQTVDLAKEYADAAGNSAGNAKDSEDEARRIVASIKEAGLYGYITRRSFEKGFNVTTWNEVLLWEEDGEYYRWDGTLPKNVPAGSTPESSGGVGLGSWVSVGDASLRALLLSTAGANNVVTDSGETVQSSLDKVAPEYFSSFSYAISGTVKANEVTVSYKYGSVSYLSTGTTGTPSTGNAHTFYDATGKGFTISEPKRQKNSDGIVAFSEVWTKLDLDPTLFEKASNLGIGTFVFYTWTAGVDTYRAFLDLAELYGFDVILQAVPNAAYSSDLDADFAKLSSLFNHPSVIGLYLFDEPNLSTYPLTRQGEIIAKAKTLSNLPLYAASNAEVNGESLPLHMDIDYVFTSQYAHFIGASGIRRYAASMWSAMEEEGMRVGRIIPLLTAYWYENEASTLNSAQITAVNNFICKNFAKIGVWAFYADKVGHFLENDDQIYNLVKQSLAIRKSKIKDCKLIRTLFRKANALPANCYKYQTKPTVAGDVFWLNPTSTATWNDPAGVIRIKAGEQFAINFGRPVRLEAIIAAFKDNNGSSNSATMSLTFNPTIASGRVHDTTVTKVGGGDFEWFFTDLSEPPHLVTTVAIKVVSSTGSDYLILERIGFVYSE
Physico‐chemical
properties
protein length:713 AA
molecular weight: 78276,76360 Da
isoelectric point:5,08870
aromaticity:0,11360
hydropathy:-0,14250

Domains

Domains [InterPro]
DC_0369
STR
1–711
DC_0369
IPR005604
ATT
10–113
IPR005604 G3DSA:2.10.10.80
IPR040775
RBD
155–211
IPR040775
AGG68786.1
1 713
Architecture
ATT
STR
ATT
STR
ATT 1-113 | STR 114-149 | ATT 150-220 | STR 221-711 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG68786.1
1 713
Domain Start End Length (AA) Confidence
N-terminal 1 303 303 0,9865
Central domain 304 502 200 0,8898
C-terminal 503 713 210 0,2770
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-303
Central
304-502
C-terminal
503-713

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage LSB-1
[NCBI] 		1301204 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG68786.1 [NCBI]
Genbank nucleotide accession
KC425724.1 [NCBI]
CDS location
range 1 -> 2139
strand +
CDS
ATGTCCACGATTACACAATTCCCTTCAGGAAACACTCAGTACAGGATTGAGTTCGACTACCTAGCCAGAACGTTTGTTGTTGTTACGCTGGTGAATAGCTCTAACCCTACCCTGAACCGTGTACTGGAAGTTGGTCGAGATTACCGCTTCCTTAATCCAACGATGATTGAGATGTTGGTTGACCAATCAGGTTTCGACATCGTTCGTATTCACCGTCAGACTGGAACTGACTTAGTGGTAGACTTCAGGAATGGCTCAGTGTTGACAGCTAGTGACCTGACCAATGCAGAGCTTCAGGCTATCCATATTGCAGAAGAAGGTCGAGACCAAACTGTTGACTTAGCGAAGGAATATGCCGATGCTGCTGGTAACTCTGCTGGCAACGCTAAGGATAGCGAGGACGAAGCACGACGAATCGTTGCGAGCATCAAGGAAGCTGGTCTATATGGCTATATTACCCGTCGCTCCTTCGAGAAAGGCTTCAACGTTACAACATGGAACGAGGTCCTGCTATGGGAAGAGGATGGTGAGTATTACCGCTGGGATGGTACGCTTCCAAAGAACGTTCCTGCTGGTTCAACTCCTGAATCATCTGGAGGTGTTGGTCTTGGCTCGTGGGTTAGTGTTGGTGATGCTTCATTGAGAGCTTTACTTTTAAGCACTGCTGGTGCCAATAATGTTGTCACTGATAGTGGGGAAACAGTTCAGTCATCTCTTGACAAGGTTGCACCTGAATACTTTTCTTCATTCTCGTATGCAATATCTGGGACAGTGAAAGCAAACGAAGTAACCGTAAGTTATAAGTATGGAAGCGTTTCTTATCTTTCTACTGGCACTACTGGTACGCCTTCAACTGGTAACGCACATACTTTCTATGATGCCACCGGTAAGGGCTTCACTATTTCCGAACCTAAACGACAGAAAAACTCTGACGGGATTGTTGCATTTTCAGAGGTTTGGACTAAGTTGGACTTAGACCCTACTCTGTTTGAAAAAGCCAGTAACTTAGGGATAGGGACATTCGTGTTCTACACCTGGACGGCAGGCGTTGATACATACCGTGCATTTCTGGACTTAGCTGAGTTGTATGGTTTTGATGTCATCCTACAGGCAGTACCAAACGCGGCATATTCATCCGATTTGGACGCAGATTTCGCTAAGCTGTCTTCTCTATTTAATCACCCTTCTGTTATTGGTCTATACCTATTCGACGAGCCGAACTTGTCTACATACCCTCTTACCAGACAAGGAGAGATTATTGCTAAAGCGAAAACACTTAGTAACCTACCGCTGTACGCCGCTAGTAACGCAGAAGTTAACGGGGAATCTCTACCACTCCATATGGATATTGATTACGTATTTACATCCCAGTACGCGCATTTCATAGGTGCATCTGGTATCCGTCGATATGCTGCCTCTATGTGGTCAGCTATGGAGGAAGAGGGGATGAGGGTAGGGCGTATAATTCCGCTCCTGACAGCATACTGGTATGAGAATGAGGCCTCAACTTTAAACTCCGCCCAGATTACAGCGGTTAATAACTTCATTTGTAAAAACTTTGCTAAGATAGGAGTGTGGGCTTTCTATGCCGATAAAGTTGGCCACTTCCTAGAAAACGATGACCAGATATATAATCTCGTGAAACAAAGTCTTGCCATCCGCAAGAGTAAAATAAAAGACTGTAAGTTGATACGCACACTATTCCGAAAGGCTAACGCCCTGCCAGCTAACTGCTATAAATACCAGACAAAACCAACTGTCGCAGGGGATGTGTTCTGGCTAAACCCAACATCAACCGCTACATGGAACGACCCCGCAGGAGTTATCCGAATTAAGGCAGGGGAGCAATTCGCCATAAACTTCGGGAGACCGGTACGTCTGGAGGCGATAATTGCAGCCTTCAAAGACAACAACGGTTCGAGTAACAGCGCCACCATGTCTCTCACTTTCAACCCAACCATCGCATCCGGTAGGGTGCATGATACTACTGTCACAAAAGTAGGCGGCGGTGATTTCGAGTGGTTTTTTACTGATTTATCGGAACCACCCCATTTAGTTACTACAGTGGCTATAAAGGTTGTATCGTCCACTGGCTCTGACTACCTGATTTTGGAGCGAATCGGATTTGTTTACAGCGAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60947ded57ee53cccef20e26dfe517d6767eea66f1f3595c7def5a9f822fba7a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6878
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Molecular characterization, structural analysis and determination of host range of a novel bacteriophage LSB-1 Chai,Y., Xiong,H., Ma,X., Cheng,L., Huang,G. and Zhang,Z.R. 2010 20875143 GenBank