Protein

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Genbank accession
GENB_c7a98f7eb4b0 [GenBank]
Protein name
receptor binding protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MATAVFKPYRDYSTMAAQFHYRTVQDTAVPGRDYNHVEGDVTIPIGATSIEIPVEIVDKLPNRLPRSFFMEFSSKSQGVMIGTQRAKCTIVSDENLDRISWDTVEERMFHPRYWVTTTQQTESTCIVADDNCCINRLVSRTYGGMAGCIWETVDKYDHFGIGFDDHYEMRNTKLWFRMSITNASNFSTPEKMIMTVDLVDGTIIYVPLAQYAVSISEDKNVAEIHIDFEDCVGMDQNNNMMGVDPRQVRRILIPLMPKDWVSNSTDPRTENVECELRLDLLQPDTGWKMMELNNIQVKEHDVGICTAYDDMWNVSPLRVLNNIKRLGYTGTINHYVGMSHYYDYTWSGTQWSINRTGALNAAAYKWHDDFMYNAKRHNFDVMQSVSFELFSDACPLEWTQRDWNDNYAKTGYTPCSYLLSPTIEEGMNFLTAVFKNFASAAMRNNLPVIMQVGEPWWWYNTDTRRPCIYDYPTKQAFYDETGEYALDIGTIDDPKTGGVYDKYVAFCRGKLGARIAAISKAIKAHAASAQMTALLFFPTIMETELTQKLNLADQYKKEAGALDFFCTECYDWVMQGGIEKAKESVNIPIVKLGWQPSEIQYLAGFVPSKELAPVYGYDPTRNYQEFLWRCICGNMATIEYRYPEVKQYVWAYPQVMSDSITVTARDSTVLHMGQVALKGYVEDVVPPDFS
Physico‐chemical
properties
protein length:690 AA
molecular weight: 79101,82000 Da
isoelectric point:5,00674
aromaticity:0,12319
hydropathy:-0,33275

Domains

Domains [InterPro]
IPR038081
ATT
9–94
IPR038081 IPR057102 IPR057122 DC_0314
IPR038081
ATT
9–95
IPR038081 IPR057102
IPR038081
ATT
14–100
IPR038081
IPR003644
ATT
17–91
IPR003644
GENB_c7a98f7eb4b0
1 690
Architecture
ATT
TAS
TAS
RBD
ATT 9-100 | TAS 101-285 | TAS 299-658 | RBD 659-688 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_c7a98f7eb4b0
1 690
Domain Start End Length (AA) Confidence
N-terminal 1 42 42 0,1948
Central domain 43 299 258 0,7904
C-terminal 300 690 390 0,3102
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-42
Central
43-299
C-terminal
300-690

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage D1
[NCBI] 		2047933 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
MG065646.1_CDS_[104460..106532] [NCBI]
Genbank nucleotide accession
MG065646.1 [NCBI]
CDS location
range 104460 -> 106532
strand +
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
3e8c49b4461d84a5a2d5aa4436af26b11714a2a9e9f41f324958183b69040bde

                    

                    
                      ESMFold
                    
                  

                  

                  

                    

                      Source
                      ESMFold
                    

                    

                      Method
                      ESMFold
                    

                    

                      Resolution
                      0,7113
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
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Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50