Protein

View in Explore
Genbank accession
QWY83433.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MKVDGSLKSLLQGVSQQPPRDRLPGQATLQENMSSDPITGLTRRPATDLVNKLLNSADIRGWHDFDTKDGSKYIAAFYSNTVKVFDLNGVAKTVTVDADAQAYISLAGELRFNTIENDTFVVNRSKAVTMLSTVRTYFNNVNRQAFIIQVLGGQYGRTYNVKINGTEYASFTVADGSVATHIDQTRTKYIANQLYTDLDAAAGLSAWSIILKDDIILMYVNDSNDYTITVNDDYGNTNIKACGVTVARTEDLPRFAPHNFVCRVAEKTDPEQDLWFRFIVEGQEDNLDSNNTSLFGQQGYWQECVAPETKTSFDNATMPHLLVANTDGTFRFRRVLWENREVGTTTSNPDPSFVGGKITDVATFQGRLVFLSGPNVIMSRTNRSTDFWFGSASAQADTDPIDVRSKVEASTMQAAIQHNRDLVIFSNKGQFIVFGRQSLTPGNAALVLSSSFEAELRAKPVGAGRNVFFATNFGSYTGIREFFVESGTDINDSRAITQHCKKYIEGKVLKLAASSNYDTILVQTDKDTGVVYWYQYIWKDNEKIQSAWSKLIFKQTVVHTFFDEETVYLIMKQGNDYYLTRMSLDVQNSTGIDYHIHLDNRFDVIDVSTQFVLPYSYLATTGLIAVQGPGCPTPGMPVPIKSIVGSTVTLKNDMNGGDIVVGSSYKSKYVPTMPMVKDQDQVKVGTGNLTVSRFKIALASTGEIVARWISKYANGPDIRFNGRIIGAPENQVGEQPLSNDTFVVPFGHKADLADLEIWTESHLPLTMLDIEWEGQYTKRGKRIATGS
Physico‐chemical
properties
protein length:787 AA
molecular weight: 87401,22080 Da
isoelectric point:5,61827
aromaticity:0,10165
hydropathy:-0,27789

Domains

Domains [InterPro]
DC_0058
STR
1–787
DC_0058
IPR058003
TTP
3–783
IPR058003
QWY83433.1
1 787
Architecture
STR
STR 1-787
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QWY83433.1
1 787
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9907
Central domain 138 336 200 0,1260
C-terminal 337 787 450 0,2882
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-336
C-terminal
337-787

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_X3_9
[NCBI] 		2836085 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QWY83433.1 [NCBI]
Genbank nucleotide accession
MW960034 [NCBI]
CDS location
range 27451 -> 29814
strand +
CDS
ATGAAAGTTGACGGCTCGCTGAAGTCGCTCCTACAGGGCGTCTCTCAACAGCCGCCGCGTGATCGGTTGCCGGGTCAGGCTACTCTACAAGAGAACATGAGTTCTGACCCGATTACCGGGCTTACCCGTCGCCCTGCAACAGACTTGGTAAACAAGCTGCTGAATAGCGCGGACATTCGCGGCTGGCACGACTTTGATACCAAAGACGGTTCCAAATACATCGCTGCATTCTACAGCAACACTGTCAAGGTGTTCGATCTGAACGGTGTAGCGAAGACAGTTACAGTGGACGCAGACGCCCAAGCGTACATATCGCTTGCTGGCGAACTCCGCTTTAATACCATCGAGAACGATACGTTCGTTGTGAACAGGTCCAAGGCAGTTACCATGCTGTCTACTGTCCGGACGTATTTCAACAACGTCAACCGACAAGCCTTCATCATTCAGGTGCTCGGCGGTCAATACGGACGAACCTACAACGTCAAGATCAACGGCACTGAGTACGCCAGCTTTACCGTAGCAGATGGCTCGGTTGCTACGCACATCGATCAGACCCGCACCAAGTACATCGCGAACCAACTGTATACCGATCTGGATGCAGCCGCCGGACTGTCCGCGTGGTCGATCATACTGAAGGATGACATCATCCTGATGTACGTGAACGATAGCAACGACTACACCATCACGGTGAACGACGACTACGGTAACACGAACATCAAGGCTTGCGGCGTAACGGTTGCTCGTACGGAAGACCTACCTCGCTTTGCACCGCATAACTTTGTCTGTCGCGTGGCCGAGAAGACCGACCCGGAGCAAGACCTGTGGTTCCGCTTCATTGTGGAAGGGCAGGAGGACAACCTCGACAGCAACAACACATCGCTGTTCGGGCAGCAAGGGTACTGGCAGGAGTGCGTAGCTCCTGAGACCAAGACCAGCTTCGACAACGCTACCATGCCGCATCTACTTGTGGCTAACACAGACGGCACCTTCCGGTTCCGGCGTGTCCTTTGGGAGAACCGCGAAGTCGGGACGACTACCAGCAACCCGGACCCGTCCTTTGTCGGCGGCAAGATTACAGACGTGGCCACCTTCCAAGGACGCCTTGTCTTCCTCTCTGGACCTAACGTCATCATGTCCCGCACGAACCGGTCTACGGACTTCTGGTTCGGAAGCGCGAGCGCACAGGCCGATACCGATCCGATCGATGTCCGGTCTAAGGTCGAAGCCTCTACGATGCAGGCTGCTATCCAGCACAACCGCGATCTGGTCATCTTCTCCAACAAGGGGCAGTTCATCGTCTTCGGACGACAGAGCCTGACACCCGGCAACGCAGCACTTGTGCTGTCCTCGTCCTTCGAGGCAGAGCTACGGGCCAAGCCAGTCGGCGCAGGGCGGAACGTGTTCTTCGCTACGAACTTCGGTTCCTACACTGGCATCCGCGAGTTCTTTGTCGAGAGCGGTACGGACATCAACGATAGCCGTGCCATCACGCAGCATTGCAAGAAGTACATCGAAGGCAAGGTGCTGAAGCTCGCTGCCAGTTCGAACTACGATACGATCCTCGTCCAAACGGATAAGGATACGGGCGTGGTCTACTGGTATCAGTACATCTGGAAGGACAACGAGAAGATACAGTCTGCATGGTCGAAGCTGATCTTCAAGCAGACGGTAGTGCATACGTTCTTCGATGAAGAGACGGTGTACCTGATTATGAAGCAGGGTAACGACTACTACCTGACCCGCATGTCTCTCGACGTGCAGAACAGCACTGGTATCGACTACCACATTCATCTGGACAACCGCTTCGACGTTATCGACGTGAGCACACAGTTCGTCCTACCGTACTCGTACCTCGCCACCACTGGACTGATCGCAGTGCAGGGACCGGGATGCCCGACGCCGGGTATGCCAGTACCGATCAAGAGCATCGTTGGTAGCACAGTGACGCTCAAGAACGACATGAACGGTGGTGACATCGTTGTAGGCTCTAGCTACAAGTCCAAGTACGTACCGACCATGCCTATGGTCAAGGACCAAGATCAGGTCAAGGTAGGTACAGGCAACCTCACAGTTTCCCGCTTCAAGATCGCACTGGCGAGCACTGGCGAAATCGTCGCACGGTGGATCAGCAAGTACGCCAACGGGCCAGACATACGGTTCAATGGTCGTATCATCGGTGCACCCGAGAACCAAGTCGGTGAGCAGCCGCTGTCTAATGACACGTTCGTCGTGCCGTTCGGACACAAGGCTGACCTTGCTGATCTGGAAATCTGGACCGAGAGCCATCTACCGCTCACGATGCTGGACATCGAGTGGGAAGGCCAGTACACGAAGCGCGGCAAGCGTATCGCAACAGGATCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
fb826984e3172637b62b8424137522a466897cb4065489153133bd965f38239e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3058
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity and Expansion of Phages in the Symbiotic Bacteria Rhizobium Gonzalez,V., Santamaria,R.I., Bustos,P., Cauwenberghe,J. and Juarez,S. 2017-09-25 — GenBank