Protein

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Genbank accession
YP_008126828.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MKKVTSSRAYDCLVQKYIGSAYDKVKDVSDNLEKVSSVADNLTQVNLLIPELDNIKACAENIDEIKNAPIAAENANNSAILANDVLEQIKDIVSDLEAVPLGNGSWQAGQTFTAYNQFMVYNGIAYKPLTTTTLPYEPTGATPDLAFVGPFDANDHSKLNNRDEAGAHPASAIDGAMWHVGTVKDLQGLVGVGGIQVSVASYHDLDYLSGGGTFVWGTGRHNGGTFIDPNRPFPTDWNDQGQLKTWFAESSSDVGGWSRTYENDINVSYFGYLKDSNNNETFKAVANHVELSKERVSGYEKDTTFVVSTSQISTIQKAANLFPRYLDFKFSIEIEPGDYSAEDVKVPSTSRATNQNLHEPCSATIKSATGNPDDVLVGSIFFVNAGGSNTQDITIDHTTPLYSGESGGLAYWFCSGEVSCSNIKYSAGFVGAGILAYGSKVEARTIDVTNLDVLVRAKRGAEVHIRFCTGDFTGDRVIVSYEGSGVVSGNHTFTKSSGVWADVDGTSTVINRDTGEYSYSVYSQIPLLRDNNLLLKRTTNFGSTETLLDGVKPLNTDSVFTQLGDYCFVSGSNGKNLTLDRNNYQSADNHRRYKSDGTASGLSLSADGNIYFHFYAAGTEDDVVTRASAKSIFMNAGGLRNDSDNVPWINGSSSGKFVLTPSGTFGASSDSNAIQLLNRTGTDGAVTSFYKNGSAVGGISVSSNATAYNTSSDYRLKTNIRECDNALSIVKNLNPVTFDWIRDGSTTTGFLAHELAEQIPEAVTGTKDELNQDGEPVYQAVDHSKIVPYLTKVIQDLMDRVEQLERIK
Physico‐chemical
properties
protein length:808 AA
molecular weight: 87348,25090 Da
isoelectric point:4,83662
aromaticity:0,09282
hydropathy:-0,34097

Domains

Domains [InterPro]
DC_0421
STR
15–808
DC_0421
IPR030392
CHP
712–764
IPR030392
IPR030392
CHP
712–808
IPR030392
YP_008126828.1
1 808
Architecture
STR
STR 15-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008126828.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 314 314 0,9946
Central domain 315 513 200 0,9686
C-terminal 514 808 294 0,8536
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-314
Central
315-513
C-terminal
514-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JA-1
[NCBI] 		1283071 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008126828.1 [NCBI]
Genbank nucleotide accession
NC_021540 [NCBI]
CDS location
range 57351 -> 59777
strand -
CDS
ATGAAAAAAGTAACTAGCAGTAGGGCTTATGATTGCTTAGTTCAGAAATATATTGGGTCAGCTTACGATAAAGTTAAAGACGTGTCTGACAACTTAGAAAAAGTGTCTTCCGTAGCTGATAACTTAACTCAGGTAAATTTACTTATACCAGAATTAGATAATATTAAAGCATGTGCAGAAAATATAGATGAAATTAAAAATGCCCCTATTGCGGCGGAGAATGCAAATAATAGTGCGATTTTAGCTAATGATGTTTTAGAACAAATTAAAGATATTGTGAGTGATTTAGAAGCAGTTCCACTTGGGAATGGTTCTTGGCAAGCTGGACAGACGTTCACCGCGTACAATCAGTTTATGGTGTATAACGGCATAGCGTACAAACCCCTAACGACCACGACGTTGCCCTACGAACCTACTGGAGCTACGCCCGATTTAGCCTTTGTTGGGCCGTTTGATGCAAACGACCACTCGAAGTTGAATAATCGTGATGAGGCAGGGGCACATCCTGCTAGTGCTATTGATGGAGCAATGTGGCACGTTGGTACGGTTAAGGACTTGCAAGGATTAGTAGGTGTGGGAGGTATTCAGGTTAGTGTTGCTTCTTACCACGATCTTGATTACTTATCGGGTGGGGGTACGTTTGTATGGGGTACTGGTCGTCACAATGGTGGAACTTTTATTGACCCCAACAGACCTTTTCCGACTGATTGGAATGATCAAGGTCAGCTTAAGACTTGGTTTGCTGAATCGAGTAGTGACGTGGGCGGGTGGAGTCGTACCTATGAAAATGATATTAACGTAAGTTATTTCGGATATTTAAAAGACTCCAACAACAATGAAACTTTTAAAGCAGTGGCTAATCATGTGGAACTAAGCAAAGAGCGCGTAAGCGGTTATGAAAAAGACACGACTTTCGTTGTGTCTACATCGCAGATTTCCACGATACAAAAAGCAGCAAATCTATTTCCACGTTACCTTGATTTCAAATTTTCGATTGAAATTGAACCGGGGGACTACTCGGCTGAAGATGTTAAAGTGCCATCAACTAGCAGAGCAACTAACCAAAATTTACATGAACCATGCAGCGCAACAATAAAAAGTGCAACAGGAAATCCCGATGATGTATTGGTAGGGTCTATTTTCTTTGTAAACGCTGGGGGTTCAAACACCCAAGATATTACGATAGATCATACCACCCCGCTGTACAGCGGTGAATCTGGTGGTTTGGCATACTGGTTTTGTAGTGGGGAAGTCAGTTGCAGTAACATTAAATACAGCGCTGGATTTGTTGGCGCCGGGATCTTGGCATACGGATCTAAAGTTGAAGCACGAACTATAGATGTAACAAACTTAGACGTTTTGGTGAGAGCAAAGCGTGGTGCAGAGGTTCATATTAGATTTTGCACTGGCGATTTCACTGGTGATCGAGTCATTGTGTCATACGAAGGTTCTGGTGTAGTTTCAGGAAATCATACTTTTACTAAGTCCAGTGGTGTATGGGCCGATGTTGACGGAACATCAACAGTAATAAACAGAGATACAGGAGAGTATTCTTACTCTGTTTATAGCCAAATTCCTTTACTCAGAGACAATAACCTACTGCTGAAGCGAACTACTAATTTTGGTAGCACAGAAACTTTATTGGATGGAGTTAAACCCCTCAATACCGACTCCGTGTTCACACAGTTGGGTGATTATTGTTTTGTATCGGGTAGTAACGGCAAGAATTTGACACTGGACAGGAATAACTATCAGTCTGCTGATAACCATCGTCGGTATAAATCTGACGGCACGGCTAGTGGTCTAAGTTTAAGTGCAGATGGTAACATTTACTTTCATTTTTACGCCGCTGGGACGGAAGATGACGTTGTAACTCGAGCGTCTGCCAAGTCTATCTTTATGAATGCAGGGGGGTTAAGGAATGATTCAGACAATGTACCTTGGATCAACGGATCAAGCTCTGGGAAGTTTGTTTTAACTCCATCTGGAACTTTTGGGGCATCATCTGACAGCAACGCAATTCAATTACTAAACAGAACAGGAACTGACGGCGCAGTTACGTCTTTTTATAAAAATGGGTCGGCGGTAGGTGGTATCTCGGTTTCCTCTAATGCAACAGCATACAATACAAGTTCTGACTATAGACTAAAAACAAACATTCGAGAGTGCGATAATGCGTTAAGCATTGTAAAAAATCTTAACCCTGTTACTTTTGATTGGATTAGAGACGGGTCTACTACAACAGGGTTTTTAGCGCACGAATTGGCTGAGCAAATTCCAGAGGCGGTAACAGGAACTAAAGATGAGCTAAATCAAGATGGAGAGCCTGTTTATCAAGCTGTAGATCACTCTAAAATCGTACCTTATTTAACTAAGGTTATACAGGATTTGATGGACAGAGTGGAGCAGTTAGAAAGGATTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f7fc829a6f758d6320e3ef5fa093e3d3bb599e660bd56cccf80c5c5f5d73cc48
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6264
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50