Protein

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Genbank accession
ABH04446.1 [GenBank]
Protein name
p023
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAITAAEAFRDYETDGVPSSGSHKIKKSDMRNWGAWVEGLISAFTANGGLIFSSKATLDANLAYAANTMAWVIGDATAANNGVYGKVGASGSGSWTRRADLPFSFIIASDVGAGTPNAIQATTTIPVSGSALVWMNIFEANTASPVTVSFNGGAALTVKTNAGNDVAVGGLTPGMIVMGIVSGSTFRLVSDQASAAIVAAAEAAQVAAEAAQAAAEAAASSANIRHADTRTALKAYNTVVTKLAFLGEGGREGLFEWMAGDYSTYIAADTAEGVFIKADAIASTAGAWVRVYDELDVRWFGAVGDGSDATSEFSAAISLALFLGLNKVVCHDATKQFKLVELEIPGSIEIDMGGATLLADFNNLYTQTCATILQTSTEANAFDVTIRHAVIDGQNDGTNASGFGGRPLLDFKGGAIELDHCVVKRGANRGPGATVSYFDGTQGEIQCKNPTRVYIHHCEIGASPGEQVHILSNKTTAIGRPVVVIEHCRFYKDRLWDPGTYWSSSSVVIYNCTKTSYMADCQFEQHIKSAVNWFGPGTIERCQFSGVSDSQAIDFDEAASFGIDQVTVRDCFFQNVIGGYAVRASCRHAVLENLDINRCQNGIYIEVQGTTPSVFSGVGAQTPRSMYNVFMRNITGNGNEVPDGAGAAVTNTLIKVKGLDQTNPANVYIEGTGNHQHSTGGDFPSANEEYGIDIENCYLFLRGAFAHGATSKVRMAGHSKFKAADCQFFLRGASNLLTVNGGTVRDIVFEDCETKENSWTGKHVAFLSAPTMSGRLYRTRAGDIDVTDAGIPYTTNYTTTGTT
Physico‐chemical
properties
protein length:803 AA
molecular weight: 84906,85480 Da
isoelectric point:5,19931
aromaticity:0,09091
hydropathy:-0,03474

Domains

Domains [InterPro]
DC_1788
STR
24–560
DC_1788 DC_1941
IPR012334
STR
295–719
IPR012334
IPR011050
STR
308–653
IPR011050
ABH04446.1
1 803
Architecture
STR
RBD
STR 24-719 | RBD 720-803
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABH04446.1
1 803
Domain Start End Length (AA) Confidence
N-terminal 1 308 308 0,9703
Central domain 309 792 485 0,9919
C-terminal 793 803 10 0,3340
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-308
Central
309-792
C-terminal
793-803

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage 16-3
[NCBI] 		10704 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABH04446.1 [NCBI]
Genbank nucleotide accession
DQ500118 [NCBI]
CDS location
range 15889 -> 18300
strand +
CDS
ATGGCCATCACCGCAGCAGAGGCCTTCCGCGACTACGAAACTGATGGTGTGCCGTCGTCTGGGTCGCATAAGATTAAAAAGAGCGACATGCGCAATTGGGGCGCATGGGTCGAAGGGCTAATCAGCGCCTTTACCGCAAACGGCGGGCTAATCTTCTCGAGCAAGGCAACGCTCGACGCCAACCTTGCTTATGCCGCCAATACCATGGCGTGGGTCATTGGTGACGCGACGGCCGCGAATAACGGCGTCTATGGCAAGGTCGGTGCCTCTGGTTCTGGATCGTGGACCCGCCGCGCCGACCTGCCGTTCAGCTTCATCATCGCATCGGACGTCGGCGCCGGCACTCCGAACGCCATTCAGGCGACGACGACCATTCCGGTGTCCGGGTCTGCCCTCGTCTGGATGAACATCTTTGAGGCCAATACTGCAAGCCCGGTCACTGTCAGCTTCAACGGCGGCGCTGCACTCACGGTCAAGACTAACGCTGGAAATGACGTCGCGGTCGGCGGTTTGACTCCCGGCATGATCGTCATGGGCATCGTTTCGGGATCGACGTTCCGACTGGTGAGCGATCAGGCTAGCGCTGCGATTGTTGCGGCCGCAGAGGCAGCCCAGGTTGCCGCTGAAGCTGCGCAGGCAGCAGCCGAGGCGGCCGCCTCGAGCGCGAATATTCGGCACGCTGACACTCGTACTGCGCTCAAGGCGTACAACACCGTCGTGACCAAGTTGGCCTTCCTAGGGGAAGGCGGGCGCGAAGGTCTTTTCGAGTGGATGGCCGGCGACTACTCCACCTACATCGCCGCCGATACGGCTGAAGGCGTTTTCATCAAGGCCGACGCTATTGCCTCTACTGCTGGCGCCTGGGTGCGCGTTTATGACGAACTGGATGTTCGCTGGTTTGGTGCTGTGGGCGATGGGTCCGACGCCACATCCGAATTCTCTGCGGCAATCTCATTGGCGCTGTTTCTCGGGTTAAACAAGGTCGTTTGTCATGATGCAACCAAGCAATTCAAACTTGTTGAATTAGAAATTCCCGGCTCAATCGAAATCGATATGGGCGGCGCCACACTACTGGCAGATTTCAACAACTTATACACGCAAACTTGCGCAACGATCCTGCAGACTAGCACGGAAGCGAACGCATTTGACGTCACGATTCGCCACGCCGTGATTGATGGGCAAAACGACGGGACAAACGCTTCGGGTTTCGGCGGCCGCCCTCTCCTAGACTTCAAGGGCGGCGCAATCGAACTGGACCATTGCGTCGTTAAGAGGGGTGCCAATCGAGGGCCAGGCGCCACTGTTAGCTATTTCGACGGCACACAGGGGGAAATTCAATGCAAGAACCCCACTCGCGTTTACATCCATCACTGCGAAATTGGAGCGAGCCCCGGCGAACAGGTTCACATTCTCTCCAATAAAACGACAGCGATCGGTCGACCCGTCGTCGTTATCGAGCATTGCCGTTTTTATAAGGATAGACTTTGGGATCCGGGTACTTATTGGTCTTCTTCCTCGGTGGTGATCTACAACTGCACCAAAACAAGCTATATGGCGGACTGCCAGTTTGAACAGCATATCAAATCCGCCGTGAATTGGTTCGGTCCAGGGACGATCGAGCGTTGCCAGTTCTCCGGTGTGTCGGACAGCCAAGCAATTGACTTTGACGAAGCTGCATCTTTTGGCATCGACCAGGTCACTGTGCGGGACTGTTTTTTCCAGAACGTTATCGGCGGGTACGCTGTGCGCGCATCGTGCCGTCACGCAGTTCTAGAGAATCTGGACATCAATCGGTGCCAGAACGGCATTTACATCGAAGTGCAGGGAACGACGCCATCGGTCTTCTCTGGCGTTGGTGCGCAGACCCCTCGATCAATGTACAACGTATTTATGCGCAACATCACCGGGAACGGGAATGAGGTCCCAGACGGTGCGGGGGCGGCAGTGACTAATACCCTGATAAAGGTCAAAGGTCTCGACCAGACTAATCCGGCGAACGTGTACATCGAGGGCACCGGCAACCATCAGCATTCGACCGGTGGAGATTTCCCGAGCGCTAACGAAGAGTATGGTATCGACATTGAGAATTGCTATCTGTTCTTGCGAGGGGCGTTCGCTCATGGCGCGACTTCGAAGGTCAGAATGGCCGGGCATAGCAAATTCAAGGCCGCCGATTGCCAGTTTTTCTTGAGAGGAGCGTCTAATCTGCTGACAGTGAACGGAGGCACGGTGCGTGACATTGTTTTCGAAGACTGCGAGACAAAAGAAAACTCTTGGACCGGAAAACACGTCGCGTTCTTGAGCGCCCCCACAATGAGCGGTCGTCTGTACCGCACTCGCGCCGGCGACATCGATGTGACAGACGCCGGCATTCCCTACACTACGAATTATACGACAACCGGCACAACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b216487501d6b254299ab2c7596b13e026a551c680d3300d33e317f3a749440
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7981
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Related repressor specificity of unrelated phages Dallmann,G., Papp,P.P. and Orosz,L. 1987 — GenBank