Protein

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Genbank accession
QPB10093.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLEDLKTAKKNQIFEAEVITGRAGGVAGGASIDFATNANTGQVQKTMPAILRDIGFTPASFDFVTGGTIAANERNVAVLWPLPGGDGDWYYWEGALPKVIPASSTPNSTGGVANGAWRPLGDITLRGQLAAATGGSLVGIRQSNVLAELEVTPEQFGADPTGVVPADTAFQAALNFVAGTKNKVLTLKGTYSLAGSATLTVANNVTIKGNRRGMSQGIQTMQGPMTDTTEATILVKTPSGTTTPLFTCGRDASFHGFSIIYVNQPRSATLLSDILTYGPTIKASHSCSVTNMRYVAAWDFFNASGEAHFLKDIYGYAFNVDFHIDTCADVSRFENIHINSNVYRPDWNVIDLVAPRATSRAFELVQHDGMMFSNIHVFAKGTVFHNRQNGTVRLCTLHGSIFSIDKCGTLLDSDVNGAVCADLSGGEFIHDYHTNNGAVMNFSNPVASQVTNYIFKSWKFQLGSPGTSPGQGSWAPYLFNANSTSGARIWLDDVVVPALSTVVLNNDFNSNRLEGSLVVGTRLLHLSANTPNLIPNSRLVSIDPFNNIPSGFNKLGSLVTVAGRNVTSTIASPPTGLGLSARVDATFTAACTAYVYASSKGDSTGITVTAYTDDFSNSIAFQGTWQPNGNLWLARIEIPSSPGRSHWDITANAPSATGGTLQIQSMHFVAGAPLEFSPTSDDPPITLSQLGGRSGKMTLVANVAQQVPSYVYPNDTGAAILSIRTTTATSVWMISKRRTDLAGVTQQYVNQTGSEVVTVTWPIGVGARPTIQSNVAGDISIAVSGV
Physico‐chemical
properties
protein length:795 AA
molecular weight: 84046,36470 Da
isoelectric point:6,06378
aromaticity:0,08428
hydropathy:-0,00717

Domains

Domains [InterPro]
DC_1596
STR
1–357
DC_1596 DC_2026
G3DSA:2.10.10.80
ATT
65–141
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
95–131
IPR040775 IPR012334
QPB10093.1
1 795
Architecture
STR
ATT
STR
RBD
STR 1-64 | ATT 65-141 | STR 142-548 | RBD 599-795
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB10093.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,9926
Central domain 174 532 360 0,9904
C-terminal 533 795 262 0,9924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-532
C-terminal
533-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SmaS-Smarc3
[NCBI] 		2777233 No lineage information
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB10093.1 [NCBI]
Genbank nucleotide accession
MT980832.1 [NCBI]
CDS location
range 24068 -> 26455
strand +
CDS
ATGTCTAGCGGCTGCGGTGACGTGCTGTCACTTGAAGACCTGAAAACGGCAAAGAAGAATCAGATTTTCGAGGCCGAAGTTATCACCGGTCGTGCCGGCGGCGTGGCCGGGGGCGCAAGCATTGATTTCGCCACCAACGCCAACACTGGCCAGGTGCAAAAAACAATGCCAGCGATCTTGCGAGATATTGGTTTTACGCCAGCCTCGTTCGATTTTGTTACCGGAGGCACTATCGCGGCCAATGAGCGTAACGTGGCGGTATTGTGGCCGCTGCCGGGTGGTGACGGGGATTGGTATTATTGGGAGGGCGCATTGCCTAAGGTAATCCCCGCCTCATCTACCCCGAACAGCACTGGTGGCGTGGCTAATGGCGCGTGGCGGCCGTTGGGCGACATTACCCTGCGAGGTCAGCTGGCCGCTGCTACGGGGGGCAGCCTTGTAGGGATCCGCCAAAGTAACGTATTGGCGGAGCTGGAAGTAACGCCGGAACAGTTCGGCGCGGACCCAACTGGCGTAGTGCCGGCTGATACGGCGTTCCAGGCAGCGCTTAATTTCGTAGCGGGGACAAAAAACAAAGTTCTCACGCTTAAGGGTACGTATTCACTCGCCGGCAGCGCCACCTTAACCGTGGCCAACAACGTGACGATCAAGGGTAATCGCCGCGGGATGTCCCAGGGCATTCAAACGATGCAAGGGCCAATGACGGATACCACCGAAGCCACTATTTTGGTAAAGACTCCATCCGGTACTACCACACCACTGTTTACCTGCGGCCGCGATGCATCATTCCACGGTTTCTCGATCATATATGTTAATCAGCCACGTAGCGCCACACTGTTGAGCGACATCCTTACATACGGTCCGACTATTAAGGCGTCGCATTCCTGCTCGGTGACCAACATGCGCTATGTTGCCGCGTGGGACTTTTTCAACGCGTCGGGTGAAGCCCATTTCCTAAAGGACATCTACGGTTATGCATTTAACGTTGATTTCCATATTGATACCTGCGCGGACGTCAGCCGATTCGAAAACATCCACATTAACAGTAACGTGTACCGCCCGGACTGGAACGTTATCGACCTGGTGGCACCCCGGGCCACAAGCCGAGCATTTGAACTTGTCCAGCACGACGGCATGATGTTCAGCAATATCCACGTTTTTGCTAAGGGAACCGTGTTCCATAACCGTCAAAACGGAACCGTGCGGTTATGCACATTGCACGGCAGCATTTTCTCTATTGATAAATGCGGCACGCTTCTTGACTCTGACGTTAACGGCGCAGTTTGCGCGGATCTGTCCGGCGGTGAGTTTATCCACGACTACCACACCAACAATGGCGCAGTGATGAATTTCTCTAACCCAGTGGCGTCGCAGGTGACAAACTACATCTTTAAATCGTGGAAATTCCAGCTCGGAAGCCCAGGCACATCACCAGGTCAAGGAAGTTGGGCACCATATCTGTTCAACGCCAATTCCACATCTGGCGCCCGTATTTGGCTTGACGATGTGGTAGTGCCAGCGTTGTCTACCGTGGTGCTTAACAATGATTTCAACAGCAACCGTCTCGAAGGGTCATTGGTTGTCGGAACCCGTCTGCTGCACCTTAGCGCAAACACCCCTAACCTGATTCCTAACTCGCGTCTGGTTAGTATCGATCCGTTCAATAATATTCCTAGTGGTTTCAACAAATTAGGTTCCCTGGTTACTGTTGCCGGGCGTAACGTAACCAGCACTATCGCGTCACCGCCTACGGGTCTTGGTCTTAGCGCCCGCGTAGACGCCACATTTACGGCAGCATGTACGGCTTATGTTTACGCGAGCAGTAAAGGCGACAGCACCGGGATTACCGTTACCGCGTATACGGATGATTTTTCCAACTCGATCGCCTTTCAAGGAACTTGGCAGCCAAATGGCAACTTATGGCTGGCGCGTATCGAAATCCCGTCTAGCCCTGGGCGATCGCATTGGGATATAACTGCCAACGCTCCTTCAGCGACTGGCGGGACTTTACAGATTCAGAGTATGCACTTTGTCGCGGGTGCGCCGCTGGAGTTTTCGCCGACGAGTGACGACCCACCTATTACGCTTTCTCAATTAGGAGGCCGTTCAGGTAAAATGACGCTGGTAGCCAACGTGGCGCAGCAGGTTCCTTCTTACGTATATCCCAACGATACAGGCGCGGCGATACTGTCGATACGAACTACTACCGCTACAAGCGTGTGGATGATCTCTAAACGACGTACTGACCTCGCCGGGGTGACTCAGCAATACGTCAATCAGACCGGATCGGAGGTGGTTACCGTAACATGGCCTATTGGTGTAGGGGCTAGACCTACAATTCAGTCGAACGTGGCGGGTGATATTTCGATAGCGGTAAGCGGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1c77e4e76f720fdbf776ed6688f4029adb152b2ab14cd88fc89bf70facfaa284
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2890
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50