Protein

View in Explore
Genbank accession
UYE96852.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAYIGRNPAIGTQKVLDSLESQFNGSKVTFDLRYSSNTVYPPIASALIVSLGGVLQEPGSAYTVASDTITFASAPTAGTDCWILLYTEFGGALGPIVDLTVSNNLTIGNELHGPANFVIDPATIGDNTGTVEIKGNLTVQGTQTTVNSTTVDLDHLSLGDGEIANFGTDNDLRIYHSGNVSRIYDTSTNLQIAGSIVELRNSGTNEVMIAAYEDDRVELYYDDSKKLETTSTGVTITGTVTADGLSLGDNETANFGNDNDLQIRHNNSNSIIEHNGTGNLYIQTTGDNEDLYIQSADNVLIRSQGSEDGIRVIGNGAVELYYNNAKKLETTSTGVDITDTLNVSGLTTLNSLQVETFSTFNGNTKHFDGKYANFGNSTDLQIVHDGANSVIQNTTGQFFIDNNASGGDLFLRANDDVVIRVDGNDTVLTAQTGGIDVTGHTETDTLRVSGIATFTGSETNFEGLTKIKITSDGQALQLINTSNANNAYVDQRFNIDGHSRASIRGQIFGANLGGLLRFYTAANSQVLTERAVIDYNGRFGINVTSPTETLDVGGTTQTQQLNVTGVSTFANTISVAETIQHTGDTNTSISFPSNDYIRLTTSGSSRLNATPNGYILLGTNSEPSGGDAHARNARLVVQGRIGNTADSGRLNLQRGSSTSNGSSIGSITFTDNSNNAYARIETIADAAPGANDFPGAIVFSTTPDGSASPTESLRITSAGYVSIPDDSGRFTAGSSNDLQIYHDGSNSYVEDVGTGALIMKGSTVRIRSTTNENMLSASQNGAISLYYDNSVKLGTTSTGIDVTGKTDTDTLNVSGLSTLQGTLEFDSTLQSYDPAGGGGSDTSTSAAIALPSGKQIVGVDDGYIRSLLSWSNSSNIIIGQQNTSKIQGIQLKPGTNAGVGLHYGGSGDNLKFRTTSTGVDVLGGIDVEGGDIVFDSDTESNFLYISRQGSTSNEFTRISRGDTVTTFLTKNDEESSTVRFRILNTDTEAGGGANANARNIDLISDQTNARIVIDGNTVWHAGNDGSGSGLDADTLDGQQGSYYTNAANLTGTLPAIDGSSLTGIIASNATTLDNLDSSQFLRSDVPDEYRGGTLSINSDSNTGHYVGWGMEYKNNNWRHTNANSWGFAHRNSGGIFDIHVAAEAGTADSVVTYKTFRVGGSSQLLQYDGNNVWHAGNDGSGSGLDADTVDGIQASSFLRSNADDQFTGTITASSDGSNPIILVKGSGPNFIRFASDSSGTVDADSIDFVYRSTPNTLGFERSSDGTTFWTTDADTGVTNFNYTPTVSGSSIFNASNLNAGTIPDARIPDVITPATRVQTAEIRGNGTQLVLNAGEAAGKFSGQTAEKIYLNSEGGTRISTPTGGGNFESGYVTNITEITGQGIFFHNGTTRIGEITTQDTTWLRINQTTAKNIYTPRYIRADGGLFVDGTAKGINGSGNFIGGTIAGASDVTDANTANTVVKRNGSSDINCRLVRQSYQNQSTISGGIVYRINNSNDNYLRVCNSPSAIRTFLGVTATGSDGNYLRANATDTATGTLTFNGLVNIRNGLDFADGDFIRMGSSDDWTATFNNNNWLYINQKGNGIIFQDNGTGKMVLEDSGIFRPHSNNQGAIGTTTHRWNIVYAYGIRSQSQGSPGHNNSTTGYALSSTGAGYFSRSGGEALYCNRNQNGGIVRFGRSGSEKGQIVMNTNSVSYQTTSDYRLKENVVALENGIERVKQLKPYRFNFIDDPNETLDGFLAHEAQEVVHECASGTKDEMKGIGTLTEWDGTTLETDVVEPDELTWEETITDEEGNETTQTRTRTWTQTGTQPVHQGIDQAKLVPLLTAALQEAITKIEQLEARITQLEST
Physico‐chemical
properties
protein length:1848 AA
molecular weight: 195997,57830 Da
isoelectric point:4,55305
aromaticity:0,07305
hydropathy:-0,38820

Domains

Domains [InterPro]
DC_0955
STR
2–246
DC_0955 DC_0955 DC_0955 DC_2081 DC_1367
DC_0955
STR
240–358
DC_0955 DC_2081 IPR030392 Coil
UYE96852.1
1 1848
Architecture
STR
STR
RBD
STR 2-1153 | STR 1171-1219 | RBD 1463-1848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYE96852.1
1 1848
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,6691
Central domain 194 392 200 0,2863
C-terminal 393 1848 1455 0,8238
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-392
C-terminal
393-1848

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-TIM66
[NCBI] 		2969442 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. CC9605
[NCBI] 		110662 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYE96852.1 [NCBI]
Genbank nucleotide accession
OP053360 [NCBI]
CDS location
range 70823 -> 76369
strand +
CDS
ATGGCATATATTGGACGTAATCCGGCCATTGGAACACAGAAGGTATTAGATAGCCTAGAGTCTCAGTTTAACGGAAGCAAAGTAACTTTTGATCTGAGGTACTCAAGTAATACCGTCTACCCGCCAATTGCCTCAGCATTAATTGTCAGCCTTGGCGGTGTGCTTCAGGAGCCGGGTAGTGCCTATACAGTAGCTTCCGACACCATTACCTTTGCCTCTGCTCCTACAGCAGGAACCGACTGTTGGATTTTATTGTACACAGAGTTTGGCGGGGCTCTTGGACCTATAGTTGATTTAACAGTATCTAATAACCTTACCATTGGCAACGAGCTGCACGGCCCTGCCAACTTTGTCATTGACCCCGCCACAATTGGAGATAATACCGGCACGGTGGAGATTAAGGGCAACCTAACGGTCCAGGGCACCCAGACCACTGTTAACTCCACGACGGTCGATCTTGATCATCTGTCCCTAGGAGACGGCGAAATTGCAAATTTTGGCACTGACAACGATCTTAGGATATATCACTCTGGCAATGTTTCTAGGATTTATGATACTTCAACCAACTTACAGATTGCCGGCAGCATAGTCGAATTACGCAATTCTGGGACAAATGAGGTGATGATTGCCGCCTATGAAGACGATAGGGTAGAGCTTTATTATGACGATAGCAAGAAACTTGAAACAACATCTACTGGTGTAACAATAACAGGAACAGTTACGGCTGATGGGCTATCCCTAGGAGACAACGAGACTGCCAATTTTGGTAATGATAATGACTTACAAATTCGTCACAATAACTCTAATAGTATTATTGAGCATAATGGAACTGGAAATCTTTATATTCAAACTACCGGAGATAATGAAGATTTATATATACAATCAGCCGATAATGTACTTATAAGATCTCAAGGTAGTGAAGATGGTATTAGAGTTATTGGTAATGGTGCGGTAGAACTTTATTATAATAACGCGAAGAAATTAGAAACCACATCTACTGGTGTTGATATAACTGATACTCTAAATGTCTCTGGTTTAACAACTCTCAATTCACTTCAAGTAGAAACTTTTTCCACATTTAATGGAAATACAAAACACTTTGATGGAAAGTACGCAAACTTTGGTAATAGCACTGACTTACAGATAGTTCATGATGGTGCTAATTCTGTTATTCAAAATACAACTGGTCAATTCTTTATTGATAATAATGCAAGTGGCGGTGATTTATTTTTAAGAGCTAATGATGATGTTGTTATTAGAGTTGATGGCAATGATACTGTGCTTACTGCTCAAACTGGTGGTATTGATGTAACAGGACATACTGAAACTGATACCTTAAGAGTTTCTGGTATTGCTACCTTTACAGGATCAGAAACCAACTTTGAAGGATTGACAAAGATAAAAATTACAAGCGACGGACAGGCATTACAGTTAATAAACACCAGCAATGCTAATAATGCTTATGTGGATCAACGATTTAACATTGATGGACATTCTAGAGCTAGTATAAGGGGGCAGATATTCGGGGCAAATTTAGGTGGATTACTAAGATTTTATACTGCTGCTAATTCACAAGTACTCACAGAAAGAGCAGTTATTGATTACAATGGAAGATTTGGAATAAACGTTACTTCTCCAACAGAGACTTTAGATGTTGGAGGAACTACTCAAACTCAACAGTTAAATGTAACTGGTGTTTCTACGTTTGCTAATACTATTTCTGTTGCTGAGACAATTCAACACACAGGAGATACTAATACCTCTATCAGCTTCCCTTCTAATGATTACATTAGACTTACAACATCTGGTTCCTCTAGACTTAATGCTACTCCAAATGGTTACATTCTATTAGGAACAAATAGTGAACCTTCTGGTGGTGATGCTCATGCACGAAATGCAAGGCTAGTTGTTCAAGGAAGAATTGGCAATACTGCTGATAGTGGCCGTCTTAATCTGCAACGTGGATCATCTACATCTAATGGCTCTAGCATTGGAAGTATTACTTTTACTGATAATAGTAATAATGCTTATGCAAGAATTGAAACAATAGCTGATGCAGCACCGGGTGCTAATGATTTTCCAGGTGCTATTGTTTTTAGCACTACTCCAGACGGATCTGCATCACCAACAGAAAGCCTTCGTATAACTTCTGCTGGATATGTCTCTATTCCAGATGATAGTGGTAGATTTACTGCCGGTAGTAGTAATGATCTGCAAATTTATCATGATGGAAGTAATAGCTATGTAGAGGATGTAGGAACTGGTGCTCTCATCATGAAGGGAAGTACTGTTCGTATTAGATCCACTACTAACGAGAATATGCTTAGTGCTTCTCAAAATGGAGCAATAAGTCTTTATTACGATAATAGCGTAAAACTTGGAACAACATCTACTGGTATTGACGTAACAGGAAAAACAGATACTGATACTTTAAATGTCTCTGGTCTTTCTACACTCCAAGGAACTCTTGAATTTGATAGCACTTTGCAAAGTTATGATCCGGCTGGAGGTGGGGGATCCGACACATCAACATCTGCAGCAATTGCTCTTCCTAGTGGAAAACAAATTGTTGGAGTTGACGATGGATATATTAGAAGCTTATTAAGCTGGAGTAATAGTAGTAATATCATAATAGGACAACAAAACACATCTAAAATTCAAGGCATTCAATTAAAACCGGGAACTAATGCTGGAGTCGGACTTCATTATGGTGGAAGTGGTGATAATTTAAAATTTAGAACCACGTCTACTGGCGTTGATGTACTTGGTGGCATCGACGTAGAAGGCGGTGATATAGTATTTGATAGCGATACTGAAAGCAACTTCTTATATATTTCTAGACAAGGAAGCACCTCTAATGAGTTCACTAGAATAAGCCGGGGTGACACTGTTACTACTTTCCTCACTAAAAATGATGAAGAAAGTTCTACTGTTAGGTTTAGAATTCTAAATACTGATACTGAAGCTGGTGGTGGGGCAAATGCAAATGCTAGAAATATTGATTTGATATCAGATCAAACTAATGCAAGAATAGTAATTGATGGTAATACAGTCTGGCATGCTGGTAATGATGGCTCTGGTAGTGGGCTTGATGCGGATACTCTAGATGGCCAACAAGGTTCTTATTATACAAACGCTGCTAATTTAACAGGAACATTACCGGCTATAGACGGGTCAAGTCTAACTGGTATTATTGCTAGTAACGCAACCACTTTAGACAACTTAGATAGTTCACAATTTTTAAGATCTGATGTTCCCGATGAATATCGTGGAGGTACGTTAAGCATTAACTCCGATTCTAATACTGGACACTATGTCGGGTGGGGCATGGAGTACAAGAACAATAATTGGCGTCACACTAATGCTAACAGTTGGGGATTTGCCCACAGAAATAGTGGAGGAATTTTCGATATTCATGTTGCAGCAGAAGCTGGCACAGCTGACAGTGTTGTAACGTATAAAACATTTAGAGTTGGTGGATCTAGTCAATTACTTCAATATGACGGTAATAACGTCTGGCACGCTGGTAACGATGGCTCTGGGTCAGGGTTAGATGCTGATACTGTTGACGGTATCCAGGCAAGTAGTTTCTTAAGGTCTAATGCCGACGACCAGTTTACAGGGACCATAACTGCATCTAGTGATGGTTCAAACCCCATAATACTTGTCAAAGGCAGCGGTCCTAACTTTATTCGATTTGCATCTGACTCAAGTGGAACTGTAGACGCTGACTCGATAGATTTTGTATACAGATCAACTCCTAATACATTAGGATTTGAAAGATCGTCTGATGGAACAACTTTTTGGACGACTGATGCCGATACAGGAGTAACAAACTTTAACTATACTCCGACAGTATCTGGTAGTAGTATTTTTAATGCTTCTAACTTAAACGCCGGAACAATTCCTGATGCCCGCATACCGGATGTAATTACACCCGCTACGAGAGTCCAAACAGCGGAGATACGAGGTAACGGCACACAGCTGGTTCTCAATGCGGGTGAGGCAGCAGGGAAATTTTCAGGTCAAACCGCTGAAAAGATCTACCTCAACTCTGAGGGCGGGACACGAATCTCAACGCCTACCGGCGGTGGAAATTTTGAATCGGGTTACGTCACAAACATCACAGAGATAACAGGACAGGGAATTTTCTTTCATAACGGAACCACCCGTATAGGTGAAATTACAACTCAAGATACAACATGGTTAAGGATCAACCAAACTACTGCTAAGAATATCTACACTCCGCGTTACATCCGCGCAGATGGTGGTTTATTTGTTGATGGAACAGCAAAAGGAATTAATGGAAGCGGTAACTTCATTGGCGGCACAATTGCAGGTGCTTCTGATGTTACAGACGCAAATACTGCTAATACAGTTGTCAAAAGGAATGGATCTAGTGATATCAATTGCAGATTAGTACGCCAATCGTATCAAAATCAAAGCACCATTAGCGGCGGCATAGTTTACCGAATTAATAACAGCAACGATAACTATCTCAGAGTTTGCAATAGCCCCAGCGCAATCAGAACATTTCTCGGAGTTACTGCTACCGGTAGTGACGGAAATTACCTCAGAGCGAACGCTACTGACACTGCCACTGGAACGTTAACGTTCAACGGCCTTGTCAATATTCGCAACGGTCTGGATTTTGCAGATGGTGATTTTATACGGATGGGATCCAGCGATGACTGGACTGCTACCTTTAACAACAATAACTGGCTCTATATAAATCAAAAGGGGAACGGAATTATTTTCCAAGACAATGGCACCGGTAAGATGGTTTTGGAAGACAGCGGAATCTTTAGGCCACATAGTAACAACCAGGGCGCTATTGGTACAACTACCCATCGATGGAATATTGTATACGCCTACGGCATAAGATCACAATCTCAAGGAAGTCCTGGACATAACAACAGCACTACCGGTTATGCACTAAGCAGCACCGGCGCAGGCTACTTTTCACGTTCTGGCGGTGAAGCGCTTTATTGCAACAGAAACCAAAACGGCGGTATTGTTCGTTTCGGTCGGAGCGGGTCTGAAAAGGGGCAAATTGTAATGAACACCAACTCGGTGTCTTATCAAACCACGTCAGACTATCGACTTAAAGAAAACGTTGTTGCTTTAGAAAACGGAATAGAGCGAGTTAAGCAGCTTAAGCCATATCGTTTCAACTTTATTGATGATCCTAACGAAACCCTTGACGGTTTCCTTGCTCACGAGGCTCAAGAAGTTGTACATGAATGTGCTTCTGGGACAAAGGACGAAATGAAAGGTATTGGCACACTCACCGAGTGGGATGGAACCACCCTTGAAACTGACGTTGTTGAGCCTGATGAATTAACTTGGGAAGAAACAATTACTGACGAAGAAGGCAATGAGACTACTCAAACACGAACCCGTACATGGACACAAACTGGTACTCAACCGGTTCATCAAGGGATCGACCAAGCCAAACTTGTACCGTTGCTAACTGCCGCGCTGCAAGAAGCAATTACTAAAATTGAACAGTTAGAAGCTCGCATTACTCAATTAGAATCTACGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c9cd9bb8db4afe94b7f622225f7b5fe751d5840794c79e228d6401edbe6596b9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5652
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Widespread yet persistent low abundance of TIM5-like cyanophages in the oceans Baran,N., Carlson,M.C.G., Sabehi,G., Peleg,M., Kondratyeva,K., Pekarski,I. and Lindell,D. — — GenBank