Protein

View in Explore
Genbank accession
XXK85738.1 [GenBank]
Protein name
DUF6453 domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGAGILIDYNDGRPVMEITAGLRAPSYCNTFDQRCQSDKTLTINTPLTPGSDLVVALTRPVEVIEVFDQTLVLPDPFYVTSVQRNGDSGIILRGADAYNAYSGLPQWAGIIMEVLPVGSRNAGLLVANSTDFTAISNVSRLMTCRYAQRVHVNGSMPLPVGGIPFARWDNGNVSVGFDGSNIIVRNSSYGGIDDVGAEVDLDLVIFNNTPPSPGTGITMTNNQGQVTFSTVNKPFVLNSVINIGTGGQNIGNSLVQLSYTGALIENNSGYNHVRMNGIRMAGNVVSAARNRVIGNYSRQQFQMPNRNITVPTPLLVIPNMY
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34474,67100 Da
isoelectric point:5,67704
aromaticity:0,07165
hydropathy:-0,01215

Domains

Domains [InterPro]
IPR045604
STR
4–297
IPR045604
XXK85738.1
1 321
Architecture
STR
STR 4-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXK85738.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 85 85 0,1219
Central domain 86 284 200 0,0246
C-terminal 285 321 36 0,9952
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-85
Central
86-284
C-terminal
285-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Pandora71
[NCBI] 		3446500 Viruses > unclassified bacterial viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXK85738.1 [NCBI]
Genbank nucleotide accession
PV841870 [NCBI]
CDS location
range 25617 -> 26582
strand -
CDS
ATGGGCGCTGGAATACTTATAGACTACAACGACGGAAGGCCGGTGATGGAGATAACCGCCGGACTTCGCGCTCCGTCATACTGCAATACGTTTGATCAGCGCTGCCAGTCCGATAAGACGCTGACCATTAATACTCCGCTAACCCCAGGGTCGGATCTTGTCGTTGCGCTCACGCGTCCGGTAGAAGTGATTGAGGTCTTCGACCAAACGCTGGTACTCCCGGACCCATTCTACGTTACGTCTGTACAACGTAACGGGGATAGCGGCATTATTCTACGAGGTGCGGACGCGTATAACGCATACAGTGGTCTTCCGCAATGGGCGGGGATAATTATGGAAGTGCTGCCGGTTGGGTCGCGCAATGCTGGCTTACTGGTGGCGAACTCGACTGACTTCACCGCGATATCGAACGTATCCCGACTAATGACCTGCCGATACGCGCAGCGCGTGCATGTAAACGGTAGTATGCCGCTGCCGGTGGGTGGCATCCCGTTCGCGCGCTGGGATAACGGCAACGTGTCGGTAGGATTTGATGGCAGTAATATCATCGTCCGCAATTCGTCTTATGGTGGGATCGACGACGTAGGGGCCGAAGTTGACCTGGATTTGGTTATCTTCAATAACACGCCGCCATCACCGGGGACCGGTATAACCATGACGAACAACCAGGGGCAGGTCACGTTCTCTACCGTGAATAAGCCATTTGTTCTCAATTCCGTTATTAATATCGGCACTGGTGGTCAGAATATCGGTAACAGCCTCGTACAGCTTTCATATACCGGCGCGCTTATTGAGAACAACAGCGGATACAACCATGTGAGAATGAACGGGATACGCATGGCAGGCAACGTGGTTAGCGCGGCTAGAAATCGCGTGATTGGTAACTACTCACGGCAGCAATTCCAGATGCCTAACCGCAACATAACCGTACCCACCCCGTTACTCGTCATCCCTAACATGTATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
26dfb8a8a41041d4a248e069708382ad606d890153ab10c19e8c320ea14d06cc
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8619
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of lytic bacteriophages against environmental Escherichia coli isolates and their phage resistance trade-off Soukou,V., Dioli,C., Zrelovs,N., Tseperka,M., Dioli,C., Svanberga,K., Perra,M., Freri,M., Kazaks,A., Vogiatzaki,C., Skliros,D. and Flemetakis,E. 2010-06-04 — GenBank