Protein

View in Explore
Genbank accession
WBE14023.1 [GenBank]
Protein name
structural protein PB1
RBP type
TSP
Evidence DepoScope
Probability 0,94
Protein sequence
MTYEHGIDSTYGEALADLRDKVGGMTNWSIVDDPGGGGTSLGDQGGGQSEFFVLQAPNGEQVRIGYAGMTPGDQTTGDYDNNWGIVVEHGLDWDPTGGDTSDTDNWNDGQWIDRYGSDPAQNLTDGTDNYGDTGKTEAIAPHVDPRDINTTDSVTYSLHYGDSTGFAIFLSRNVGDGNDASMALGMAQLNTFFNYNATSSRESEHALLLHGNSRSDDKGTDHVCEWNWMSAGGGTCDGRSENVDAHGTTTAYGMPNGHPDYGDYPSVDENVVATPKWTRNRSGQDYGTVIGTHEVWMMDLAGSSNGDTLQDSNANDKFRINNTNGSIEHYLTNKSVGLGLLMQ
Physico‐chemical
properties
protein length:343 AA
molecular weight: 36885,95570 Da
isoelectric point:4,21662
aromaticity:0,08746
hydropathy:-0,75248

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBE14023.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0013
Central domain 11 209 200 0,0031
C-terminal 210 343 133 0,9953
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Saline Natrinema sp. J7-1 virus 1
[NCBI] 		2847285 Viruses > Singelaviria > Helvetiavirae > Dividoviricota > Laserviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBE14023.1 [NCBI]
Genbank nucleotide accession
AY048850 [NCBI]
CDS location
range 1 -> 1032
strand +
CDS
ATGACCTACGAACACGGAATCGACTCGACCTACGGTGAGGCGCTCGCCGACCTCCGCGATAAGGTCGGCGGAATGACCAACTGGAGCATCGTCGACGATCCCGGCGGCGGCGGGACCTCGCTTGGCGATCAGGGCGGCGGTCAGTCAGAGTTTTTCGTTCTGCAAGCCCCGAATGGCGAGCAAGTCCGCATTGGTTATGCGGGGATGACTCCCGGAGACCAGACGACCGGAGACTACGACAACAACTGGGGGATCGTCGTCGAGCACGGCCTCGACTGGGACCCGACTGGTGGTGATACGAGCGACACCGACAACTGGAACGACGGGCAGTGGATCGATCGGTACGGCTCCGATCCGGCCCAAAACCTCACCGACGGGACCGATAACTACGGCGACACCGGAAAGACCGAGGCAATCGCCCCGCATGTCGACCCCCGCGACATCAATACGACCGATTCCGTAACCTACTCGCTTCACTATGGCGATTCGACCGGCTTCGCAATCTTCCTCAGCCGGAACGTCGGGGACGGAAATGACGCCTCGATGGCACTCGGAATGGCTCAACTGAACACGTTCTTCAACTACAACGCAACGTCGTCGAGAGAAAGCGAGCACGCCTTGCTCCTCCACGGAAACTCACGCAGCGACGACAAGGGGACAGATCACGTATGTGAGTGGAACTGGATGAGCGCGGGCGGCGGCACCTGTGACGGCAGAAGCGAAAACGTCGACGCTCACGGAACGACGACCGCCTACGGGATGCCGAACGGTCACCCCGATTACGGCGACTACCCCAGCGTCGACGAAAACGTCGTCGCGACTCCGAAATGGACGCGCAACCGGTCCGGACAGGACTACGGAACGGTGATCGGCACTCATGAGGTCTGGATGATGGACCTCGCCGGGAGCAGCAACGGCGATACGCTGCAGGACAGTAACGCAAACGACAAATTCCGGATCAATAACACCAACGGGTCGATCGAGCACTATCTCACGAACAAATCCGTCGGTCTGGGTCTGCTCATGCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eed779753b2bb740bb47e08850dfbeca1036d4abbeaacb849cb97ddb01d6d722
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4781
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a novel plasmid from extremely halophilic Archaea: nucleotide sequence and function analysis Ye,X., Ou,J., Ni,L., Shi,W. and Shen,P. 2003 12694910 GenBank
Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205 Zhang,Z., Liu,Y., Wang,S., Yang,D., Cheng,Y., Hu,J., Chen,J., Mei,Y., Shen,P., Bamford,D.H. and Chen,X. 2012 22784791 GenBank