Protein

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Genbank accession
YP_009798659.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MGKVVGSYASIVRGVSEQISSDRLPGQFSEMVNMVDDPVRGKARRHGSALVDERLLMPGTLTDTQKEYLRNYRVYDFFLGGVEYSLIFQSQPRAHGDTLPLIQCMNKATGKFLTVNLSESVAGALDPWKDGGISAVTLVGRFLVMASNQLGPGYATTDKFAATQEWGVAWVRGGAYSRTYKLVIRGAPGSYPGSPVYTATYTTMASSYPSLLDTSDIAQSDPEYQKKVNDRVNAYNSAVNKWVGDALASTQPQNIAAQLAAQLTAAGYVNLAVVGGSIFMDRIADMTCDDSGDGTLFRAVFNEVDDPAKLSTVHGDQKVVRVKPRGTDEVYYMRAVKTDTAMNHFGPVQWVEGPAQVVTPGQVFALAHVTSTTITLANSPAQLAAAIGSAVPGYAPSVCGDLLDAGAVPYFFGRKVSHMTMFQDRLCVVSNGVILMSRTGDYFNWFRKSKLRVDDDDPIEAFALGSEDDIITQSSTYNKDLVFFGERGQYALPGRSAITPKTVSITQVAGERDAMLARPIPVGNLLFYGKYETKLDQTGPSKFAASLSQFQLGLFQDTPETYNASQQLDAYLRGRIIELASLPKPYTVFCRTDGLDNGLYTYRFIDQQGTQARQFDSWSRWEWDERVGTIVGLTTYKATLYVYVVRINAAGVWIGAENFIMDSSTAVSSYLDSQRSGAQYDAATSATKFIAPDNPADEKAQQYMGGKRPYPTAYLGGAVTNYADLRANVFGGDNTRYDVGFQFQSYTDLTPPYVRDRNDKAIVNGRLVVNRYTVSVTETAGMDSYLTAQNQTTNVQRFSGRRVGISNNQVGIQPYSTAVVDVPAGRANTEHSMRLQSRTWLPMTISSIEWVGQLFINSRRV
Physico‐chemical
properties
protein length:861 AA
molecular weight: 94373,99140 Da
isoelectric point:6,44909
aromaticity:0,10453
hydropathy:-0,24472

Domains

Domains [InterPro]
DC_0058
STR
1–861
DC_0058
IPR058003
TTP
162–860
IPR058003
YP_009798659.1
1 861
Architecture
STR
STR 1-861
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009798659.1
1 861
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,9726
Central domain 159 357 200 0,3772
C-terminal 358 861 503 0,2025
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-357
C-terminal
358-861

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RsoP1IDN
[NCBI] 		2060091 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009798659.1 [NCBI]
Genbank nucleotide accession
NC_047930 [NCBI]
CDS location
range 23713 -> 26298
strand +
CDS
ATGGGCAAGGTTGTAGGATCGTACGCCTCGATCGTGCGGGGCGTCTCAGAACAGATTTCATCTGATCGTCTGCCGGGCCAGTTCTCGGAGATGGTCAACATGGTTGATGACCCGGTGCGCGGGAAGGCCCGCCGCCATGGATCGGCCCTCGTTGATGAGCGCTTGCTCATGCCGGGCACGCTCACCGACACGCAGAAGGAATATCTGCGGAACTATCGAGTGTACGACTTCTTTCTCGGCGGCGTAGAGTACAGCCTGATCTTCCAGTCGCAGCCCCGTGCGCATGGGGACACGCTGCCGCTGATCCAGTGCATGAACAAGGCCACGGGCAAGTTCCTCACAGTGAACCTTAGCGAGTCCGTAGCCGGCGCGTTGGACCCGTGGAAGGATGGCGGCATCTCGGCGGTGACCCTCGTGGGGCGATTCCTCGTGATGGCCTCGAATCAACTCGGGCCGGGCTACGCCACCACGGACAAGTTCGCCGCGACGCAGGAGTGGGGCGTAGCATGGGTGCGCGGCGGGGCGTACAGCCGCACGTACAAGCTCGTCATTCGTGGGGCGCCTGGATCGTATCCGGGATCGCCGGTCTACACGGCCACATACACCACTATGGCCTCGTCGTACCCAAGCCTATTGGACACCTCCGATATTGCGCAGAGTGACCCAGAGTACCAGAAGAAGGTGAACGACCGCGTGAACGCGTACAACTCCGCAGTGAACAAGTGGGTGGGCGACGCGCTCGCTAGCACGCAGCCGCAGAACATCGCGGCGCAGCTTGCGGCGCAGCTTACCGCTGCGGGCTACGTCAACCTCGCAGTGGTCGGCGGCTCGATCTTCATGGACCGCATCGCGGATATGACTTGTGATGACTCTGGCGACGGCACGCTGTTCCGTGCCGTATTCAATGAGGTGGACGACCCGGCCAAGTTGAGCACCGTCCACGGCGACCAGAAGGTCGTGCGCGTCAAGCCGCGAGGCACCGACGAGGTGTACTATATGCGGGCCGTCAAGACAGACACGGCGATGAATCACTTTGGGCCGGTTCAGTGGGTCGAGGGCCCGGCACAGGTAGTTACGCCGGGTCAGGTGTTCGCGTTGGCGCACGTCACCTCTACCACGATCACGCTCGCCAACAGCCCGGCACAGCTTGCAGCTGCCATCGGCTCGGCAGTGCCGGGGTACGCCCCAAGTGTATGCGGGGACTTGCTGGACGCGGGCGCGGTGCCGTACTTCTTCGGGCGCAAGGTATCGCACATGACGATGTTCCAAGATCGCCTGTGCGTCGTGTCCAACGGCGTGATCCTGATGTCGCGCACCGGGGACTACTTCAACTGGTTCCGCAAGTCGAAGCTCCGCGTAGACGACGACGACCCGATCGAAGCATTCGCCCTGGGGAGCGAGGATGACATCATCACGCAGTCGAGCACGTACAATAAAGACCTGGTCTTCTTCGGGGAACGTGGACAGTACGCGCTGCCGGGGCGATCGGCCATCACGCCCAAGACTGTCTCCATAACACAGGTAGCCGGCGAGCGGGATGCCATGCTCGCTCGGCCGATCCCCGTAGGCAACCTGCTGTTCTACGGCAAGTACGAGACGAAGCTGGACCAAACCGGCCCAAGCAAGTTCGCGGCGTCGTTGAGCCAGTTCCAGCTTGGCCTGTTCCAAGACACGCCCGAGACATATAACGCATCCCAGCAGCTTGACGCATACCTACGTGGGCGCATCATCGAGCTTGCGTCGCTGCCCAAGCCCTACACGGTGTTCTGCCGCACGGATGGGCTGGACAACGGGCTGTACACGTACCGCTTCATCGACCAGCAGGGCACACAGGCCCGCCAGTTCGACTCGTGGTCGCGGTGGGAGTGGGATGAGCGCGTGGGTACCATCGTCGGGCTGACGACGTACAAGGCCACGCTGTATGTGTACGTCGTACGGATCAACGCCGCGGGCGTGTGGATAGGTGCTGAGAACTTCATCATGGACTCGTCCACGGCAGTATCCAGCTACCTCGATTCGCAGCGCAGCGGGGCGCAGTACGATGCGGCCACCTCGGCCACGAAGTTCATCGCGCCGGATAACCCAGCGGATGAGAAGGCGCAGCAGTATATGGGCGGAAAGCGCCCGTACCCGACAGCCTATCTCGGCGGCGCAGTCACGAACTACGCTGACCTGCGGGCTAATGTGTTCGGCGGGGACAACACCAGGTACGATGTTGGGTTCCAGTTCCAGTCGTACACCGACCTAACCCCGCCGTACGTGCGCGACCGCAATGACAAGGCCATCGTTAATGGCCGGCTCGTTGTGAACCGCTACACCGTAAGCGTGACGGAGACAGCCGGCATGGACTCGTACCTGACCGCGCAGAATCAGACCACGAACGTGCAGCGCTTTAGCGGCCGCCGTGTCGGCATCAGCAACAACCAAGTGGGCATCCAGCCCTACTCGACCGCAGTGGTGGATGTGCCCGCGGGGCGCGCCAACACAGAGCACAGCATGCGCTTGCAGTCGCGTACGTGGCTGCCAATGACCATCTCGTCAATCGAGTGGGTCGGGCAGCTCTTTATAAACAGCCGCCGAGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
590adcacfeb89e7d0a9174afad1d744c5caa0f7d7a973eb6a89851a915c9d242
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8090
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Ralstonia solanacearum infecting bacteriophage RS-IDN-P1 isolated from eggplant soil in Indonesia Addy,H.S., Farid,M.M., Ahmad,A.A. and Huang,Q. 2021-09-27 — GenBank