Protein

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Genbank accession
ABY62862.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDNYLLRYAIDNVWQNPAVDRQFSYELKQVTPRYGVRGNYVVDYTRYFLPTNNNRDYYHIYQIGQVIPANVGYPGKRDTWIKLADLATQDLTLIEVYQTNGIRYSMSETYVMVTSKSNLLVAVKLNDRFPALDDNQLYIHFYHNGYFNSPRSVDAGKHWIDVLSGSVANAAAIRQLQIQIMDLVAAKGGVPMYFVNGKPVNEISIVTCAPGDYYDFILDPSIKRVVELKVDDLQVFNSTLDTQRKYIVHYPGEGDDVIDFYDDITVHLIKYGTAPGNYSGITYHHNQGIWLRQLTHRDYSMPVTRVQELIAENPGWNGIGDTYVKLYIRHGAYDRPLVADASRIWELYKLSDTNILMCMTGTGAENPLWRAENLERAAYIEFMSAPPKQIYPITYNEPKLTTQAKIDAQNFAGEVFGYHECAKLMNDNPAKVYVDPHTGIRMVDLSFYFWRNVTLFEYDANGYLLGHYYQEGGETYNVVNANCEYVEAITGKGSTNLHGVYGNDPVTLNPKYNFRVYVCKVWGGVVSNEWIDITDLPDRNTYGFLDTSNLEAPVWNWVVPGNQYLGYLRTDEYFYLNELTFSDNPGLIRFAIAGIENQNGAEINKTLEIPFGELDMFMNQKSMIYGLDFWDDGEMIVINNLEARRTDGIQNVTVRGTGFCSPDLKRYPPGELGFVEYNVLSNDSTYQIHTHKVQRIVVDGRYMDYHDVVFEEDSGGRVMDNVRNGAPYQIQTPQVVLKTVFKDDYKARVEDDQRDQWTSEAMTYYFPKRDRELVDVIPRPYIVYSALSNKVLYDLVKGTLAPPFINGQYSDQELAAYMSGYAWLQPFDILNREYNTNHVRVYPHWNTTPIGLTDDQYTFYTRVLKLFLRQPMELSPFIYITRT
Physico‐chemical
properties
protein length:883 AA
molecular weight: 101822,42890 Da
isoelectric point:5,12355
aromaticity:0,13703
hydropathy:-0,38199

Domains

Domains [InterPro]
IPR055617
STR
2–881
IPR055617
ABY62862.1
1 883
Architecture
STR
STR 2-881 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABY62862.1
1 883
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,5427
Central domain 133 872 741 0,8337
C-terminal 873 883 10 0,0941
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-872
C-terminal
873-883

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage 201phi2-1
[NCBI] 		198110 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas chlororaphis
[NCBI] 		587753 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABY62862.1 [NCBI]
Genbank nucleotide accession
EU197055 [NCBI]
CDS location
range 12124 -> 14775
strand -
CDS
ATGGATAACTATCTCTTGCGCTACGCAATTGATAACGTCTGGCAAAACCCTGCTGTAGATCGTCAGTTCTCGTATGAACTCAAACAAGTTACCCCGCGCTACGGTGTTCGGGGTAACTACGTTGTGGATTATACTCGGTACTTCTTACCGACGAATAACAATCGAGACTACTATCATATCTACCAGATCGGTCAAGTGATCCCAGCCAATGTTGGCTATCCCGGTAAACGAGATACATGGATCAAGTTGGCTGATCTTGCAACGCAGGATCTGACGTTAATCGAAGTATACCAAACCAACGGTATTCGATATAGCATGTCTGAAACTTACGTGATGGTTACCAGTAAATCCAACCTGTTGGTTGCGGTTAAACTGAATGACCGTTTCCCAGCTTTGGACGACAACCAGCTTTATATCCACTTCTATCACAACGGTTACTTTAACTCCCCACGTAGTGTCGACGCAGGTAAGCATTGGATCGACGTATTGTCTGGGTCGGTAGCTAATGCCGCCGCTATCAGACAACTTCAAATTCAGATCATGGATCTGGTAGCCGCTAAAGGTGGCGTACCAATGTACTTTGTTAACGGTAAACCCGTTAATGAAATATCTATCGTGACGTGTGCGCCGGGCGATTATTACGACTTCATATTGGACCCGTCTATCAAGCGTGTAGTCGAGCTTAAAGTAGACGACCTGCAAGTATTCAACTCAACACTGGATACACAACGTAAATACATTGTGCACTATCCAGGTGAGGGTGATGACGTTATCGATTTCTATGACGACATTACAGTCCACTTGATCAAGTACGGAACAGCTCCAGGTAACTATAGTGGCATTACTTACCACCATAACCAAGGTATCTGGTTACGTCAGTTAACTCACCGCGATTACAGCATGCCTGTTACCCGAGTGCAGGAACTGATAGCCGAGAACCCAGGTTGGAATGGTATCGGTGACACCTACGTTAAACTGTATATCCGTCATGGTGCTTATGATCGACCATTGGTAGCTGATGCATCTCGTATTTGGGAACTCTATAAACTGAGTGATACCAACATCCTGATGTGCATGACAGGTACTGGCGCTGAGAACCCGTTGTGGCGCGCTGAGAACCTTGAACGTGCAGCTTACATTGAGTTTATGTCAGCTCCCCCTAAACAGATCTATCCGATCACGTACAACGAACCTAAGTTAACTACTCAGGCTAAGATCGATGCGCAGAACTTTGCAGGCGAAGTATTCGGCTATCATGAATGTGCTAAGCTGATGAACGACAACCCGGCCAAAGTGTATGTTGACCCACATACCGGTATTCGGATGGTGGATCTATCGTTCTATTTCTGGCGTAACGTTACGCTGTTTGAATACGATGCGAATGGATATCTCTTAGGACACTATTATCAAGAAGGTGGTGAAACCTATAATGTCGTAAACGCTAACTGCGAATACGTCGAAGCCATTACTGGTAAAGGGTCTACTAACTTGCATGGTGTTTATGGTAATGATCCAGTTACCTTGAACCCTAAATACAACTTCCGAGTTTACGTCTGCAAAGTGTGGGGTGGTGTTGTATCCAATGAGTGGATTGATATCACGGATCTACCAGACCGTAACACTTACGGTTTCTTAGATACCAGTAATCTTGAAGCACCTGTTTGGAACTGGGTAGTACCCGGTAACCAGTATTTGGGTTACTTGCGTACAGATGAGTATTTCTATCTGAACGAACTAACCTTTTCCGATAACCCTGGACTCATCCGATTCGCCATTGCGGGTATCGAAAACCAGAACGGTGCCGAGATTAACAAAACCTTAGAGATTCCATTCGGTGAACTGGATATGTTCATGAACCAGAAGTCTATGATCTATGGATTGGATTTCTGGGACGACGGTGAGATGATCGTTATCAACAACTTGGAAGCACGTCGTACTGACGGTATCCAAAACGTGACAGTTCGAGGAACAGGTTTCTGTTCACCAGACCTCAAACGCTATCCACCGGGTGAGCTAGGCTTTGTAGAATACAACGTACTGTCTAACGATTCAACCTATCAGATCCACACCCACAAGGTACAACGGATCGTGGTGGATGGTCGTTACATGGATTACCATGACGTGGTATTCGAGGAAGACTCTGGTGGTCGGGTAATGGATAATGTCCGTAATGGAGCGCCTTATCAGATTCAAACCCCACAGGTTGTTTTGAAAACCGTCTTTAAAGACGATTACAAGGCCCGTGTAGAAGATGATCAGCGTGACCAATGGACGAGTGAGGCTATGACTTACTACTTCCCAAAACGCGACAGAGAGCTTGTAGACGTCATCCCTAGACCTTACATTGTTTACTCTGCACTTTCTAATAAAGTGCTTTACGATTTGGTTAAAGGTACACTTGCACCACCATTCATTAACGGCCAGTACTCCGATCAAGAACTCGCAGCTTACATGAGTGGATACGCGTGGTTGCAACCGTTTGATATCCTCAACCGGGAATACAATACCAACCATGTGAGAGTTTATCCACATTGGAACACTACCCCAATCGGACTGACTGATGACCAGTACACATTCTACACCCGTGTATTGAAACTGTTTCTCCGTCAACCGATGGAGCTGTCTCCATTCATTTACATTACGAGGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
62dc4e2fea4e7506e169c62a23cbd9ccc66fa7c60e06dc2e1dc4196b3ac3b38b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2862
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas chlororaphis myovirus 201varphi2-1 via genomic sequencing, mass spectrometry, and electron microscopy Thomas,J.A., Rolando,M.R., Carroll,C.A., Shen,P.S., Belnap,D.M., Weintraub,S.T., Serwer,P. and Hardies,S.C. 2008 18474389 GenBank