Protein

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Genbank accession
BAO20706.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MPLVSQPIKNLKGGISQQPDILRFPNQGEKQINGWSSESQGLQKRPPTVFLKRLAARGGFGAAPLVHLVNRDATEQYYMVFTGTGLLVYDLQGNSYTVRGYDGYANTATPRKSIRLLTVADYTFVVNREKVVDVGSTLSHPGYNLTRRALVGIRGGQYGRTITVKADGATLGSVVLPSGVGTDAEIKPMPAQLDAQAIATALATDINTRTGTTGVSAVAGPSYVLLTKTAGFTTVTTEDGYAGQLAASCIYQVQTLNKLPNSAPDGYLIEITGETNRSGDNYWVIWDEKGGVWKETVKPGIILGLNASTMPRGLVRAADGQFDWKVLDWRNRTAGDDETNPMPSLVDRTINDVFFFRNRLGFLAGENIVMSRSAKYFHLFPASVSSSADDDPIDVAVSHSRISILKYAVPFSDQLLLWSDQAQFVLTSSGVFTAKSAELNLTTEFDVQDSARPYGIGRGVYFSAPRASFTSIKRYYAVQDVSNVKSAEDISAHVPSYVANSVHSITGSGTENFVSVLSDGAPERNYIYKFLYLNEQVVQQSWSHWEFGAGTNVLASASIGSYMYLILERTEGIMLERIEFTDFTTDIPVEPYRTYIDSKRVITLSLYDEGQDITTFSVSTLYGGTPSNADSFWTVDANGTAILHKAPDGGWASNPIVTFQGDKRGVQLAVGRAYQFTYEFSKFLIKQQADDGTTSTEDIGRLQLRKVWVNYERSGAFNVAVDNSSSVYTYEMSGGRLGGEIVLGELSLGTGQYRFPVTGNALRQSVTITSNNPQPLNIIGCGFEGNYVRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 86603,02010 Da
isoelectric point:5,79072
aromaticity:0,10327
hydropathy:-0,19899

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
BAO20706.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAO20706.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9914
Central domain 141 349 210 0,2960
C-terminal 350 794 444 0,1656
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-349
C-terminal
350-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PPpW-4
[NCBI] 		1279083 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Phutvirus
Host Pseudomonas plecoglossicida
[NCBI] 		70775 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAO20706.1 [NCBI]
Genbank nucleotide accession
AB775549 [NCBI]
CDS location
range 25645 -> 28029
strand +
CDS
ATGCCGCTCGTAAGTCAACCAATCAAGAACCTGAAGGGCGGCATTAGCCAGCAACCCGACATCCTTCGTTTTCCCAATCAAGGGGAGAAGCAAATCAACGGCTGGTCGTCCGAGTCTCAAGGACTTCAGAAGCGTCCACCGACCGTCTTCCTTAAGAGGCTCGCAGCCCGTGGAGGGTTCGGTGCGGCCCCTTTGGTCCACCTCGTGAACCGTGACGCGACTGAGCAGTACTACATGGTCTTCACGGGCACGGGGCTGCTGGTCTATGACCTTCAGGGCAACTCGTACACCGTGCGGGGCTATGACGGCTACGCCAACACGGCCACGCCACGGAAGTCCATCAGGCTCCTTACGGTTGCCGACTACACCTTCGTTGTTAACCGTGAGAAGGTCGTGGACGTAGGGTCGACCCTGAGTCATCCGGGTTACAACCTGACGCGGCGTGCCCTTGTGGGTATCCGTGGTGGCCAGTATGGCCGGACCATCACCGTGAAGGCTGACGGCGCGACTCTTGGGTCAGTTGTGCTCCCCTCAGGTGTGGGCACGGACGCTGAGATCAAGCCTATGCCTGCTCAGCTTGACGCTCAGGCAATCGCCACGGCACTCGCAACCGACATCAACACTCGGACGGGGACCACTGGCGTCTCCGCAGTGGCTGGTCCCTCTTATGTCCTCCTTACGAAGACAGCCGGATTCACCACGGTGACCACTGAGGATGGATACGCTGGTCAGTTGGCCGCGTCCTGTATCTATCAAGTGCAGACGCTGAACAAGCTCCCAAACAGTGCCCCTGACGGCTACCTGATCGAGATCACAGGGGAGACAAACCGATCCGGCGATAACTACTGGGTCATCTGGGACGAGAAGGGCGGCGTATGGAAGGAGACGGTCAAGCCGGGGATCATCCTTGGACTGAACGCCTCCACGATGCCGCGAGGTCTCGTAAGGGCCGCTGACGGCCAGTTCGACTGGAAGGTCCTCGATTGGCGCAACCGGACGGCTGGCGACGATGAGACCAACCCAATGCCCTCGCTGGTGGATCGGACGATCAACGACGTGTTCTTCTTCCGTAACCGTCTGGGATTCCTTGCCGGTGAGAACATCGTGATGTCTCGCTCTGCGAAATACTTCCACCTGTTCCCGGCCTCGGTGTCCAGTTCTGCTGACGACGACCCTATTGACGTTGCTGTGTCACATAGCCGCATCTCGATCCTCAAGTACGCCGTTCCGTTCTCCGACCAGCTTCTACTGTGGTCTGACCAAGCTCAGTTCGTACTGACCTCTTCAGGGGTCTTTACGGCCAAGAGCGCAGAACTGAACTTGACCACAGAGTTTGACGTACAGGACTCAGCGAGACCTTACGGGATTGGCCGTGGGGTCTACTTCTCGGCCCCTCGTGCATCCTTTACGTCGATCAAGCGGTACTACGCGGTACAGGATGTGAGCAACGTGAAGTCCGCTGAGGACATCTCGGCCCACGTTCCGAGCTACGTGGCGAACAGCGTCCACTCAATTACAGGCTCTGGGACTGAGAACTTCGTGTCAGTCCTGAGCGATGGGGCACCTGAGCGCAACTACATCTACAAGTTCCTCTACCTGAATGAGCAGGTCGTTCAGCAGTCGTGGAGTCACTGGGAGTTCGGTGCAGGCACCAACGTACTTGCCTCGGCATCTATCGGCTCCTATATGTACCTCATCCTTGAGAGGACTGAAGGGATCATGTTGGAGCGCATTGAGTTCACCGACTTCACCACAGACATTCCAGTGGAGCCGTACCGGACCTACATCGACTCCAAGCGAGTGATCACGCTTTCCCTCTACGATGAGGGTCAGGACATCACGACGTTCTCGGTATCGACCCTGTACGGAGGCACGCCAAGTAACGCCGACTCCTTCTGGACAGTTGACGCAAACGGCACAGCGATCCTGCATAAGGCCCCAGATGGCGGATGGGCTTCAAACCCTATCGTGACCTTCCAAGGGGACAAGCGCGGCGTTCAGTTGGCAGTAGGTCGCGCCTACCAGTTCACCTACGAGTTCTCCAAGTTCCTCATCAAGCAACAAGCAGATGACGGAACGACATCCACAGAGGACATCGGTCGGCTCCAACTCCGTAAGGTATGGGTCAACTATGAGCGCTCGGGTGCGTTCAATGTCGCCGTGGACAACTCATCCAGTGTGTACACCTACGAGATGTCTGGGGGTCGCCTTGGAGGTGAAATTGTGCTCGGCGAACTCAGCCTTGGGACTGGTCAGTACAGGTTCCCAGTAACTGGTAACGCCCTGCGCCAGAGTGTGACCATCACATCAAACAACCCTCAGCCTCTGAATATCATCGGGTGTGGCTTTGAGGGCAACTACGTCCGGCGTTCGTCCGGCATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c2b444271005e3fe215279e75a1527e1066a0c789483b55875b3f74e87504a81
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9057
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence Analysis of Two Pseudomonas plecoglossicida Phages, Potential Therapeutic Agents Kawato,Y., Yasuike,M., Nakamura,Y., Shigenobu,Y., Fujiwara,A., Sano,M. and Nakai,T. 2015 — GenBank